Table 3.
Target, Type, Notation, Version | Length | Primer Sequence (5′ to 3′) |
---|---|---|
35Sp, Displacement, F3, DL | 15 | AGGAAGGGTCTTGCG |
35Sp, Displacement, B3, DL | 18 | ATAAAGGAAAGGCCATCG |
35Sp, LAMP, FIP, DL | 39 | GTCTTCAAAGCAAGTGG-TTTT-GGATAGTGGGATTGTGCG |
35Sp, LAMP, BIP, DL | 37 | TTCCACGATGCTCCTCG-TTTT-CCTCTGCCGACAGTGG |
35Sp, Loop, F-Loop, DL | 16 | TCCACTGACGTAAGGG |
35Sp, Loop, B-Loop, DL | 16 | GGGGTCCATCTTTGGG |
35Sp, Displacement, F3, CZ | 18 | AAGATGCCTCTGCCGACA |
35Sp, Displacement, B3, CZ | 19 | CAGCGTGTCCTCTCCAAAT |
35Sp, LAMP, FIP, CZ | 39 | ACGTGGTTGGAACGTCTTCTTCCCAAAGATGGACCCCCA |
35Sp, LAMP, BIP, CZ | 42 | ATCTCCACTGACGTAAGGGATGATAGAGGAAGGGTCTTGCGA |
35Sp, Loop, F-Loop, CZ | 18 | TCCACGATGCTCCTCGTG |
35Sp, Loop, B-Loop, CZ | 20 | ACGCACAATCCCACTATCCT |
NOSt, Displacement, F3, DL | 22 | CGCGATAATTTATCCTAGTTTG |
NOSt, Displacement, B3, DL | 19 | CGTTCAAACATTTGGCAAT |
NOSt, LAMP, FIP, PH | 46 | GCATGACGTTATTTATGAGA-TTTT-TCGCGCTATATTTTGTTTTCTA |
NOSt, LAMP, BIP, PH | 43 | CATGCTTAACGTAATTCAACA-TTTT-TGAATCCTGTTGCCGGTC |
NOSt, Loop, F-Loop, DL | 22 | GATTAGAGTCCCGCAATTATAC |
NOSt, Loop, B-Loop, DL | 23 | AAATTATATGATAATCATCGCAA |
Displacement, LAMP and loop primers which target the CaMV 35S promoter and NOS terminator sequences. Versions denoted with DL are primers designed by Lee et al.28 and version CZ refer to primers described in Zahradnik et al.7. NOSt FIP and BIP LAMP primers were modified to improve assay performance. HPLC grade purified primers were used unless specified.