Table 5.
Gene | SNP | Nucleotide change | MAF | HWE P value | χ 2 | Association P value |
---|---|---|---|---|---|---|
ATM | rs1003623 | C/T | 0.49 | 0.00 | 1.57 | 0.46 |
rs227060 | C/T | 0.32 | 0.50 | 0.85 | 0.65 | |
rs228589 | A/T | 0.46 | 0.00 | 0.82 | 0.57 | |
rs664143 | C/T | 0.37 | 0.93 | 0.20 | 0.91 | |
rs664677 | A/C/T | 0.35 | 0.23 | 0.95 | 0.62 | |
ATG5 | rs473543 | C/T | 0.39 | 0.51 | 1.42 | 0.49 |
rs3761796 | A/G | 0.07 | 0.25 | 2.06 | 0.36 | |
ATG7 | rs2594971 | C/T | 0.50 | 0.01 | 0.37 | 0.83 |
rs111595248 | C/T | 0.05 | 0.48 | 0.33 | 0.56 | |
rs4684789 | G/T | 0.42 | 0.34 | 0.50 | 0.78 | |
ATG12 | rs1058600 | A/G | 0.42 | 0.96 | 1.77 | 0.41 |
rs5870670 | Del/T | 0.39 | – | 1.37 | 0.24 | |
STMN1 | rs182455 | C/T | 0.36 | 0.35 | 2.84 | 0.24 |
ATG13 | rs13448 | C/T | 0.40 | 0.20 | 3.25 | 0.20 |
rs10838611 | C/G/T | 0.38 | 0.08 | 20.19 | 0.00 | |
MAP1LC3A | rs4911429 | A/G | 0.36 | 0.75 | 1.17 | 0.56 |
rs6088521 | A/C/G/T | 0.35 | 0.43 | 0.67 | 0.72 | |
MAP1LC3B | rs9903 | C/T | 0.19 | 0.38 | 0.55 | 0.76 |
rs35227715 | C/G | 0.25 | 0.12 | 0.53 | 0.77 | |
rs7865 | C/G/T | 0.31 | 0.00 | 0.57 | 0.45 | |
rs16944733 | A/C/T | 0.20 | 0.00 | 1.58 | 0.45 | |
CASP3 | rs1049216 | C/T | 0.40 | 0.58 | 1.75 | 0.42 |
rs12108497 | C/G/T | 0.39 | 0.25 | 0.97 | 0.61 | |
rs2720376 | C/T | 0.46 | 0.25 | 0.46 | 0.79 | |
CRYAB | rs14133 | C/G | 0.24 | 0.05 | 6.31 | 0.10 |
HWE Hardy–Weinberg equilibrium, MAF minor allele frequency, ATM ataxia telangiectasia mutated, ATG autophagy-related, MAP1LC microtubule-associated protein 1 light chain, CASP caspase, CRYAB crystallin alpha B, STMN1 stathmin 1