Fig. 5.

A maximum-likelihood phylogenetic tree showing relationships among the alleles of the Pi54 and #11 genes. The tree contains 18 genomic DNA sequences both coding and non-coding. Sequences of 10 Pi54 alleles were extracted according to the functional Pi54 sequence in Tetep. Sequences of 8 alleles of #11 are complete coding DNA sequence (CDS). Nip, Nipponbare; Sas, Sasanishiki; Tet, Tetep; Glu, O. glumaepatula; Niv, O. nivara; Bar, O. barthii; Gla, O. glaberrima; Ruf, O. rufipogon; Mer, O. meridionalis; Pun, O. punctata; Bra, O. brachyantha. Locations of Pi54 alleles on chromosome 11: Nip, 25,263,336–25,264,503; Ruf, 25,053,651–25,054,821; Mer, 21,747,946–21,749,123; Glu, 24,126,550–24,127,540; Niv, 22,154,478–22,155,468; Bar, 20,525,896–20,526,886; Gla, 18,706,523–18,707,513; Pun, 25,829,456–25,830,446. Locations of #11 alleles on chromosome 11: Nip, 25,338,884–25,345,347; Ruf, 25,125,041–25,131,339; Mer, 21,841,707–21,846,125; Glu, 24,139,300–24,147,809; Niv, 22,167,498–22,176,039; Bra, 14,455,855–14,459,981