Table 2.
List of genes encoding disease resistance related proteins in the Rcr7 C-genome target region and homologous regions in A-genome of Brassica rapa.
| B. oleracea | Gene length (bp) | No. of SNP | No. of Indel | RPKM in R bulks | RPKM in S bulks | B. rapa homologb |
|---|---|---|---|---|---|---|
| Bo7g108760 | 2724 | 4 | 1 | 2.420 | 2.433 | Bra019305; A03; 25101681 to 25104380 |
| Bo7g108830 | 1032 | 0 | 0 | 0.003 | 0.003 | Bra013698; A01; 7228683 to 7231760 |
| Bo7g108840 | 414 | 0 | 0 | 0.003 | 0.003 | Bra001161; A03; 15045523 to 15048954 |
| Bo7g108850 | 789 | 0 | 0 | 0.003 | 0.003 | Bra027889; A09; 10044020 to 10045004 |
| Bo7g108870 | 900 | 0 | 0 | 0.079 | 0.178 | Bra019297; A03; 25153454 to 25154701 |
| Bo7g109000 | 564 | 0 | 0 | 5.811 | 3.577 | Bra019277; A03; 25319404 to 25319967 |
| Bo7g109070 | 3009 | 0 | 0 | 0.237 | 0.160 | Bra019273; A03; 25345715 to 25352019 |
aEach of these genes were in the TIR-NBS-LRR class, based in gene sequence blasts at http://www.arabidopsis.org/wublast/index2.jsp.
bGene sequence was blasted at http://brassicadb.org/brad/blastPage.php.