TABLE 1.

Microbial community description^a

Identifier	Taxonomy				CheckM		Variance component estimation			Genome
	Family	Genus	Species	Group	Completeness	Contamination	A	C	E	Size (nt)	GC content	No. of ORFs
bin_1	Actinomycetaceae	Actinomyces	Actinomyces sp. oral taxon 178	I.A	74.29	4.44	0.72288	0	0.27712	1,799,133	0.715138347	1,877
bin_2	Actinomycetaceae	Actinomyces	Actinomyces sp. oral taxon 848	I.B	78.45	0	0.52721	0.28455	0.18824	1,541,794	0.69676818	1,710
bin_3	Prevotellaceae	Alloprevotella	Alloprevotella rava	II.A	89.42	5.33	0.63739	0	0.36261	2,086,006	0.549467739	2,818
bin_4	Prevotellaceae	Alloprevotella	Alloprevotella rava	II.B	89.51	44.75	0.22208	0.31498	0.46293	3,203,447	0.473549274	4,755
bin_5	Unclassified Bacteroidetes	Unclassified Bacteroidetes	Bacteroidetes oral taxon 274		96.55	40.66	0.64422	0	0.35578	2,486,193	0.434083649	3,992
bin_6	Campylobacteraceae	Campylobacter	Campylobacter concisus		49.92	0	0.21324	0.26944	0.51732	1,200,135	0.374629521	2,002
bin_7	Campylobacteraceae	Campylobacter	Campylobacter gracilis		85.89	55.88	0.68857	0	0.31143	3,163,899	0.460077898	4,920
bin_8	Unclassified Saccharibacteria	“Candidatus Saccharimonas”	“Candidatus Saccharimonas aalborgensis”	III.A	86.21	159.28	0.6728	0	0.3272	2,811,149	0.46770591	4,728
bin_9	Unclassified Saccharibacteria	“Candidatus Saccharimonas”	“Candidatus Saccharimonas aalborgensis”	III.B	74.84	9.95	0.55187	0.14287	0.30526	596,323	0.353912225	1,065
bin_10	Unclassified Saccharibacteria	“Candidatus Saccharimonas”	“Candidatus Saccharimonas aalborgensis”	III.C	65.91	14.11	0.7714	0	0.2286	1,065,796	0.522207995	1,829
bin_11	Flavobacteriaceae	Capnocytophaga	Capnocytophaga gingivalis		85.34	207.14	0.43743	0.06552	0.49705	7,550,959	0.413623753	11,576
bin_12	Cardiobacteriaceae	Cardiobacterium	Cardiobacterium hominis		73.46	49.06	0.17702	0	0.82298	3,863,328	0.596540599	5,759
bin_13	Lachnospiraceae	Catonella	Catonella morbi		72.41	28.29	0.2301	0.44126	0.32865	2,490,472	0.444225432	4,105
bin_14	Corynebacteriaceae	Corynebacterium	Corynebacterium matruchotii		89.34	3.45	0.34153	0.28628	0.37219	2,342,592	0.577838138	3,442
bin_15	Unclassified Gracilibacteria	Unclassified Gracilibacteria	Gracilibacteria bacterium JGI 0000069-K10	IV.A	79.31	56.66	0	0.20796	0.79204	1,663,606	0.370415832	1,658
bin_16	Unclassified Gracilibacteria	Unclassified Gracilibacteria	Gracilibacteria bacterium JGI 0000069-K10	IV.B	93.1	88.17	0	0.17557	0.82443	1,991,479	0.249330272	2,026
bin_17	Carnobacteriaceae	Granulicatella	Granulicatella elegans		86.21	45.96	0.37126	0	0.62874	2,163,485	0.347674701	3,562
bin_18	Neisseriaceae	Kingella	Kingella denitrificans		79.95	3.45	0.12324	0.19897	0.6778	1,689,409	0.56719184	2,733
bin_19	Neisseriaceae	Kingella	Kingella oralis		66.22	5.17	0.1973	0.02227	0.78043	1,716,807	0.54631534	2,995
bin_20	Lachnospiraceae	Lachnoanaerobaculum	Lachnoanaerobaculum saburreum		81.9	0	0	0.00123	0.99877	1,629,684	0.401290066	2,758
bin_21	Lachnospiraceae	Unclassified Lachnospiraceae	Lachnospiraceae bacterium oral taxon 500		95.69	243.39	0.69892	0	0.30108	10,502,342	0.35810365	16,794
bin_22	Burkholderiaceae	Lautropia	Lautropia mirabilis		93.97	22.57	0.48924	0	0.51076	4,240,867	0.658203853	5,584
bin_23	Leptotrichiaceae	Leptotrichia	Leptotrichia buccalis		68.13	1.72	0.60264	0	0.39736	1,129,771	0.290444701	1,818
bin_24	Moraxellaceae	Moraxella	Moraxella catarrhalis		100	16.09	0.66539	0	0.33461	2,551,229	0.381399318	4,353
bin_25	Neisseriaceae	Neisseria	Neisseria oralis		84.5	176.68	0.6901	0	0.3099	7,906,650	0.506099296	13,143
bin_26	Porphyromonadaceae	Porphyromonas	Porphyromonas gingivalis		79.31	0	0.4859	0	0.5141	1,549,578	0.427495099	2,319
bin_27	Prevotellaceae	Prevotella	Prevotella oulorum		85.11	1.03	0.48539	0	0.51461	2,201,265	0.481471336	3,248
bin_28	Prevotellaceae	Prevotella	Prevotella pallens		69.83	25.24	0.58443	0	0.41557	2,593,194	0.394058832	4,155
bin_29	Prevotellaceae	Prevotella	Prevotella sp. oral taxon 472	V.A	69.51	20.69	0.5945	0	0.4055	4,133,493	0.470396587	6,459
bin_30	Prevotellaceae	Prevotella	Prevotella sp. oral taxon 472	V.B	69.69	1.72	0.70867	0	0.29133	2,023,841	0.430838687	3,203
bin_31	Flavobacteriaceae	Riemerella	Riemerella anatipestifer		79	12.07	0.60062	0	0.39938	1,754,497	0.378369983	2,916
bin_32	Streptococcaceae	Streptococcus	Streptococcus pangenome		99.22	288.36	0.09391	0.59629	0.3098	12,438,952	0.382878879	21,444
bin_33	Tannerellaceae	Tannerella	Tannerella forsythia		80.09	1.72	0.53162	0	0.46838	2,246,045	0.587740228	2,959
bin_34	Veillonellaceae	Veillonella	Veillonella sp. oral taxon 780		91.07	91.08	0.1678	0.06556	0.76664	3,219,265	0.387835111	5,471

^aRecovered draft genomes with taxonomy, identifier mapping, CheckM statistics, variance component estimation (i.e., ACE model), and genome statistics.