Table 1.

RNA-Seq read count information

Samplea	Raw Input Reads	Clean Reads	% Clean Reads	Mapped Reads	% Mapped Readsb	Multiple Alignment Reads	%Multiple Alignment Readsb
WTNS R1	24,019,397	23,961,896	99.76	22,973,989	95.88	1,952,214	8.15
WTNS R2	22,859,782	22,779,097	99.65	21,709,287	95.30	2,029,217	8.91
WTS R1	23,050,208	22,990,113	99.74	21,979,140	95.60	1,746,186	7.60
WTS R2	23,437,864	23,362,805	99.68	22,119,198	94.68	2,102,270	9.00
L1NS R1	23,259,980	23,234,303	99.89	22,207,203	95.58	2,048,681	8.82
L1NS R2	23,944,162	23,859,454	99.65	22,673,161	95.03	2,110,311	8.84
L1S R1	22,358,313	22,282,400	99.66	21,248,337	95.36	2,332,891	10.47
L1S R2	22,980,550	22,928,854	99.78	21,527,676	93.89	1,739,326	7.59

^a R1 and R2 indicate biological replicates

^bThe % mapped reads and % multiple alignment reads were calculated using the clean reads as a denominator