Table 2.
Frequency of Gene Tree Topologies of the 8,030 Single Copy OGs
| No. | Topology | # CDS (%) | # Protein (%) | # Gene (%) | # Gene Bootstrap >90 (%) |
|---|---|---|---|---|---|
| 1 | (PKW,(C4,(M,(DH, B)))) | 11.9 | 10.58 | 13.12 | 13.72 |
| 2 | (PKW,(C4,(DH,(B, M)))) | 10.8 | 10.48 | 11.92 | 14.88 |
| 3 | (PKW,((DH, C4),(B, M))) | 9.59 | 7.28 | 12.73 | 17.52 |
| 4 | (PKW,(M,(C4,(DH, B)))) | 9.53 | 12.51 | 7.78 | 5.91 |
| 5 | (PKW,(C4,(B,(DH, M)))) | 8.02 | 7.37 | 8.89 | 8.44 |
| 6 | (PKW,((DH, B),(C4, M))) | 7.67 | 6.55 | 9.16 | 12.56 |
| 7 | (PKW,(M,(B,(DH, C4)))) | 6.66 | 8.21 | 5 | 3.06 |
| 8 | (PKW,(B,(M,(DH, C4)))) | 5.58 | 5.23 | 4.61 | 2.53 |
| 9 | (PKW,(DH,(C4,(B, M)))) | 5.41 | 5.21 | 5.18 | 4.96 |
| 10 | (PKW,(B,(C4,(DH, M)))) | 5.26 | 4.45 | 6.2 | 7.07 |
| 11 | (PKW,(B,(DH,(C4, M)))) | 5.02 | 6.82 | 3.36 | 1.9 |
| 12 | (PKW,(M,(DH,(B, C4)))) | 4.23 | 4.68 | 2.84 | 1.16 |
| 13 | (PKW,((DH, M),(B, C4))) | 4.037 | 3.61 | 4.79 | 5.06 |
| 14 | (PKW,(DH,(B,(C4, M)))) | 3.85 | 4.18 | 2.44 | 0.63 |
| 15 | (PKW,(DH,(M,(B, C4)))) | 2.38 | 2.77 | 1.92 | 0.52 |
Note.—In bold, the most frequent topology.
PKW, Musa balbisiana “PKW”; C4, Musa acuminata burmannica “Calcutta 4”; M, Musa acuminata zebrina “Maia Oa”; DH, Musa acuminata malaccensis “DH Pahang”; B, Musa acuminata banksii “Banksii”.