Table 1. Methods used to process each of 100 soil samples.
| Method | Description | Reference | |
|---|---|---|---|
| i. | Conventional semiquantitative
culture (ASH) |
100 g soil - Semi-quantitative culture on Ashdown agar in LOMWRU using the
method used previously in soil surveys in Laos. |
3 |
| ii. | Consensus method (CON-VTE). | 10 g soil - Culture by the ‘consensus method’ in LOMWRU using Ashdown agar
prepared in LOMWRU. |
33 |
| iii. | Consensus method (CON-VTE/BKK). | 10 g soil - Culture by the consensus method in LOMWRU, using Ashdown agar
prepared in MORU and shipped to Laos (in order to help determine whether differences in media performance or laboratory technique might account for differences in the performance of the consensus method in LOMWRU). |
33 |
| iv. | Consensus method (CON-BKK). | 10 g soil - Culture by the consensus method performed at MORU | 33 |
| v. | Direct PCR (DS/qPCR) | 0.5 g soil - PCR following direct DNA extraction from soil in LOMWRU | 13 |
| vi. | PCR following enrichment (ES/qPCR) | 20 g soil - PCR following broth enrichment culture in LOMWRU | 13 |