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. 2018 Oct 15;3:132. [Version 1] doi: 10.12688/wellcomeopenres.14851.1

Table 1. Methods used to process each of 100 soil samples.

Method Description Reference
i. Conventional semiquantitative
culture (ASH)
100 g soil - Semi-quantitative culture on Ashdown agar in LOMWRU using the
method used previously in soil surveys in Laos.
3
ii. Consensus method (CON-VTE). 10 g soil - Culture by the ‘consensus method’ in LOMWRU using Ashdown agar
prepared in LOMWRU.
33
iii. Consensus method (CON-VTE/BKK). 10 g soil - Culture by the consensus method in LOMWRU, using Ashdown agar
prepared in MORU and shipped to Laos (in order to help determine whether
differences in media performance or laboratory technique might account for
differences in the performance of the consensus method in LOMWRU).
33
iv. Consensus method (CON-BKK). 10 g soil - Culture by the consensus method performed at MORU 33
v. Direct PCR (DS/qPCR) 0.5 g soil - PCR following direct DNA extraction from soil in LOMWRU 13
vi. PCR following enrichment (ES/qPCR) 20 g soil - PCR following broth enrichment culture in LOMWRU 13