Fig 2. Phylogenetic analyses of major bee virus genome sequences.

Reconstruction of the phylogenetic relationships between the consensus virus sequences in the different seasonal samples of the MR (red) and MS (blue) honeybee populations. The reconstructions are obtained through a Maximum Composite Likelihood (MCL) approach, with the most likely reconstruction presented. The open, shaded and closed circles indicate different probability intervals for the partition of the taxa across the node in question, based on 500 bootstrap replicates.