Table 2.
Data collection in PlantEAR.
| Content | Numbers | Source |
|---|---|---|
| Species | 71 | – |
| EAR genes | 17,567 | Phytozome v12.0, PlantGenIE.org, SGN |
| EAR motif-containing proteins | 20,542 | Phytozome v12.0, PlantGenIE.org, SGN |
| CDS sequence | 19,781 | Phytozome v12.0, PlantGenIE.org, SGN |
| Transcript sequence | 16,360 | Phytozome v12.0, PlantGenIE.org, SGN |
| Protein sequence | 20,542 | Phytozome v12.0, PlantGenIE.org, SGN |
| Orthologous pairs | 21,920 | - |
| GO terms (genes) | 771(13,839) | Phytozome v12.0, AmiGO 2 |
| KEGG terms (genes) | 132(1,479) | KEGG |
| Related publications | 1650 | PubMed, Tair |
| Gene with mutant phenotype | 22 | AHB2.0 |
| Co-expression nodes/edges | 51,516/247,274 | ATTED-II, soyNET, RiceNet v2, TomotoNet, WheatNet, ccNET, SorghumFDB |
| Cis-element (motifs) | 930 | ccNET |
| Co-expression network modules | 260 | ccNET |
| Protein-Protein nodes/edges | 35,160/147,233 | BioGrid, TAIR, BAR, CCSB |
| Epigenetic modifications associated proteins | 956 | PCSD |
| Microarray Experiment-abiotic stress | 248 | GEO |
| Microarray Experiment-biotic stress | 30 | GEO |
| Microarray experiment-hormone | 48 | GEO |
| Microarray experiment-development | 237 | GEO |