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. 2018 Dec 6;6:217. doi: 10.1186/s40168-018-0591-4

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© The Author(s). 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 2 — MA plots from DESeq analysis showing differences in gene transcription activity between pH stages. Log₂ fold changes are presented on y-axes, while means of the normalized read counts are presented on x-axes. Red horizontal lines indicate zero-fold change, and red dots in individual graphs represent all genes independent of fold change cutoffs that changed significantly (fdr corrected p-value < 0.05)