Table 1.

Gene expression comparisons between time points and pH stages based on DESeq-fold change calculations

Time point | pH stages hours (H)	Tot. No. genes transcribed	No. genes changed significantly a	Up / down expressed genes b
9H-6H | 5.5/4.7	40,287	29,015	14,416/14,599
11H-9H | 4.7/4.5	37,666	1979	976/1002
13H-11H | 4.5/4.4	37,942	565	361/204
15H-13H | 4.4/4.4	37,941	562	358/204
17H-15H | 4.4/4.4	38,295	398	238/160
17H-21H | 4.4/4.3	38,093	27	17/10
21H-24H | 4.4/4.4	38,522	0	0

^aNumber (No.) of genes that changed significantly (fdr corrected p-value < 0.05)

^bNumber (No.) of significantly up or down expressed genes (fdr corrected p-value < 0.05)