Table 2. Characteristics of the chloroplast genomes of nine Dioscorea species.
Genme features | D. aspersa | D. alata | D. bulbifera | D. futschauensis | D. polystachya | D. elephantipes | D. villosa | D. zingiberensis | D. rotundata |
---|---|---|---|---|---|---|---|---|---|
Size (bp) | 153,337 | 153,161 | 153,075 | 153,946 | 153,243 | 152,609 | 153,919 | 153,970 | 155,418 |
LSC length (bp) | 83,517 | 83,414 | 83,226 | 83,979 | 83,431 | 82,777 | 83,865 | 83,950 | 85,600 |
IR length (bp) | 25,478 | 25,464 | 25,499 | 25,529 | 25,489 | 25,513 | 25,576 | 25,491 | 25,484 |
SSC length (bp) | 18,864 | 18,819 | 18,851 | 18,909 | 18,834 | 18,806 | 18,902 | 19,038 | 18,850 |
Total genes | 112 | 112 | 112 | 112 | 112 | 112 | 112 | 112 | 112 |
Protein coding genes | 78 | 78 | 78 | 78 | 78 | 78 | 78 | 78 | 78 |
tRNA genes | 30 | 30 | 30 | 30 | 30 | 30 | 30 | 30 | 30 |
rRNA genes | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 |
Overall GC content (%) | 37.0 | 37.0 | 37.0 | 37.2 | 37 | 37.2 | 37.2 | 37.2 | 37.2 |
GC content in LSC (%) | 34.8 | 34.8 | 34.8 | 35.0 | 34.8 | 34.9 | 35.0 | 35.1 | 35.2 |
GC content in SSC (%) | 31.0 | 31.0 | 30.8 | 31.2 | 30.9 | 31.2 | 31.2 | 31.2 | 30.9 |
GC content in IR (%) | 43.0 | 43.0 | 43.0 | 43.0 | 42.9 | 43.0 | 43.0 | 43.0 | 42.9 |