Table 3. List of significantly down-regulated DE (q < 0.01, log2-FC > 1.0, FPKM >10) transcripts in CaCV-exposed and non-exposed Thrips palmi transcriptome.
| Blastx description (no. of transcripts) |
FPKM (non-virus-exposed) |
FPKM (virus-exposed) | log2- FC | GO term |
|---|---|---|---|---|
| Larval cuticle A2B-like (3) | 117.1–220.8 | 0.3–1.8 | 9.3–8.0 | Structural constituent of cuticle |
| Serine protease inhibitor 3 4 isoform X1 | 44.2 | 0.2 | 7.9 | Extracellular space |
| Pupal cuticle C1B-like (2) | 29.4–100.6 | 0.1–0.6 | 7.4–7.6 | Structural constituent of cuticle |
| Endocuticle structural glyco bd-8-like | 53.6 | 0.4 | 7.1 | Structural constituent of cuticle |
| Alpha-tocopherol transfer -like | 28.2 | 0.2 | 7.0 | Transport |
| Collagen alpha-1(III) chain-like | 47.2 | 0.5 | 6.5 | Chitin binding, Extracellular region |
| Uncharacterized protein LOC106678716 | 29.6 | 0.3 | 6.4 | Integral component of membrane |
| Apolipo D-like | 85.8 | 1.0 | 6.4 | Pigment binding |
| Endocuticle structural glyco bd-4-like (2) | 29.8–203 | 0.4–2.8 | 6.2–6.3 | Structural constituent of cuticle |
| Uncharacterized protein LOC103510819 | 24.2 | 0.3 | 6.1 | Integral component of membrane |
| Trypsin | 24.2 | 0.4 | 6.0 | Proteolysis; serine-type endopeptidase activity |
| Serine ase stubble | 72.8 | 1.1 | 6.0 | GTPase activity, Proteolysis, Serine-type endopeptidase activity |
| Probable chitinase- 3 | 19.4 | 0.3 | 6.0 | Chitinase activity, Extracellular region |
| Fibroin heavy chain | 32.7 | 0.5 | 5.9 | Structural constituent of cuticle |
| Cuticle 7 | 49.6 | 0.8 | 5.9 | Structural constituent of cuticle |
| Glycine-rich cell wall structural -like | 37.4 | 0.7 | 5.8 | Anatomical structure development |
| Cuticular analogous to peritrophins 1-G | 12.5 | 0.2 | 5.7 | Chitin binding, Chitin metabolic process, Extracellular region |
| Cytochrome P450 4g15 | 26.1 | 0.5 | 5.7 | Iron ion binding, Oxidation-reduction process |
| Serine ase stubble isoform X2 | 16.7 | 0.4 | 5.5 | GTP binding, Serine-type endopeptidase activity |
| Location of vulva defective 1 isoform X2 | 12.7 | 0.3 | 5.5 | Membrane, Integral component of membrane |
| COPII coat assembly partial | 87.2 | 1.9 | 5.5 | Neuropeptide signaling pathway |
| Sal 1 | 20.9 | 0.5 | 5.5 | Nucleic acid binding |
| Glucose dehydrogenase [quinone]-like |
14.5 | 0.3 | 5.4 | Oxidation-reduction process |
| Proclotting enzyme-like | 14.8 | 0.3 | 5.4 | Proteolysis, Serine-type endopeptidase activity |
| Larval cuticle A3A-like | 24.2 | 0.7 | 5.2 | Structural constituent of cuticle |
| Glycine-rich cell wall structural -like | 12.9 | 0.3 | 5.2 | Chitin-based cuticle development, Structural constituent of chitin-based cuticle |
| Endocuticle structural glyco bd- partial | 168.6 | 4.8 | 5.1 | Structural constituent of cuticle, Extracellular space |
| Osiris 14 | 15.2 | 0.4 | 5.1 | Integral component of membrane |
| Cuticular precursor | 24.1 | 0.7 | 5.1 | Structural constituent of cuticle, Nucleic acid binding |
| Endocuticle structural glyco bd-2-like | 33.4 | 1.0 | 5.0 | Structural constituent of cuticle, Extracellular space |
FC = fold change of virus-exposed treatment relative to non-virus control treatment.