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. 2018 Nov 12;7:e41412. doi: 10.7554/eLife.41412

Table 2. Table of parameters used in model.

Symbol Parameter Value Reference/Notes
Vspine Volume of Spine 1 to 5×10-20 m3 (Bartol et al., 2015)
VPSD Volume of PSD (Thickness 100nm. Surface area 0.05µm2) 1 to 5×10-21 m3 Farley, 2015; Bartol et al., 2015
NCaMKII Total CaMKII holoenzymes in PSD/Spine 100 ± 18 Farley, 2015
NPP1 Total PP1 in PSD
Total PP1 in Spine
4 to 20× NCaMKII
10 to 100× NCaMKII
This paper
This paper
I1 Concentration of free I1 10 µM Miller et al., 2005
VCaN Activity of calcineurin divided by its 1 Miller et al., 2005
VCaM Activity of PKA divided by its Michaelis constant 1 s-1 Miller et al., 2005
KM The Michaelis constant of PP1 10 µM 0.4 to 20 µM (Zhabotinsky, 2000)
KH1 Hill constant of CaMKII (Ca2+ ) activation)
 
0.7 µM (De Koninck and Schulman, 1998)
nH1 Hill constant of CaMKII (Ca2+ ) activation) 3 (Stemmer and Klee, 1994)
KH2 Hill constant of CaMKII (Ca2+ ) activation) 0.3 µM (Stemmer and Klee, 1994)
nH2 Hill constant of CaMKII (Ca2+ ) activation) 3 (Stemmer and Klee, 1994)
k1 The catalytic constant of autophospho-rylation 1.5 s-1 (Hanson et al., 1994)
k2 The catalytic constant of autophospho-rylation 1 s-1 (Bradshaw et al., 2003; Ichikawa et al., 1996)
k3 The association rate constant of PP1.I1P complex 100 µM-1s-1 (Endo et al., 1996; Miller et al., 2005)
k4 The dissociation rate constant of PP1.I1P complex 0.1 s-1 (Endo et al., 1996; Miller et al., 2005)
kx+ The rate of adding unphosphorylated subunit x 1 s-1 per NCaMKII This paper
ky+ The rate of adding phosphorylated sub- unit y 1 s-1 per NCaMKII This paper
kx- The rate of losing unphosphorylated subunit x 0.1 s-1 This paper
ky- The rate of losing phosphorylated sub- unit y 0.1 s-1 This paper
vt Turnover rate of CaMKII 30 h-1 (Ehlers, 2003; Miller et al., 2005)
DPP1 Diffusion coefficient of PP1 0.5 µms−1 This paper and (Harvey et al., 2008)
Dsub Diffusion coefficient of CaMKII subunits 10-5 – 10µms−1 This paper