Table 2. Table of parameters used in model.
| Symbol | Parameter | Value | Reference/Notes |
|---|---|---|---|
| Vspine | Volume of Spine | 1 to 5×10-20 m3 | (Bartol et al., 2015) |
| VPSD | Volume of PSD (Thickness . Surface area 0.05µm2) | 1 to 5×10-21 m3 | Farley, 2015; Bartol et al., 2015 |
| NCaMKII | Total CaMKII holoenzymes in PSD/Spine | 100 ± 18 | Farley, 2015 |
| NPP1 | Total PP1 in PSD Total PP1 in Spine |
4 to 20× NCaMKII
10 to 100× NCaMKII |
This paper This paper |
| I1 | Concentration of free I1 | 10 µM | Miller et al., 2005 |
| VCaN | Activity of calcineurin divided by its | 1 | Miller et al., 2005 |
| VCaM | Activity of PKA divided by its Michaelis constant | 1 s-1 | Miller et al., 2005 |
| KM | The Michaelis constant of PP1 | 10 µM | 0.4 to 20 µM (Zhabotinsky, 2000) |
| KH1 | Hill constant of CaMKII (Ca2+ ) activation) |
0.7 µM | (De Koninck and Schulman, 1998) |
| nH1 | Hill constant of CaMKII (Ca2+ ) activation) | 3 | (Stemmer and Klee, 1994) |
| KH2 | Hill constant of CaMKII (Ca2+ ) activation) | 0.3 µM | (Stemmer and Klee, 1994) |
| nH2 | Hill constant of CaMKII (Ca2+ ) activation) | 3 | (Stemmer and Klee, 1994) |
| k1 | The catalytic constant of autophospho-rylation | 1.5 s-1 | (Hanson et al., 1994) |
| k2 | The catalytic constant of autophospho-rylation | 1 s-1 | (Bradshaw et al., 2003; Ichikawa et al., 1996) |
| k3 | The association rate constant of PP1.I1P complex | 100 µM-1s-1 | (Endo et al., 1996; Miller et al., 2005) |
| k4 | The dissociation rate constant of PP1.I1P complex | 0.1 s-1 | (Endo et al., 1996; Miller et al., 2005) |
| The rate of adding unphosphorylated subunit x | 1 s-1 per NCaMKII | This paper | |
| The rate of adding phosphorylated sub- unit y | 1 s-1 per NCaMKII | This paper | |
| The rate of losing unphosphorylated subunit x | 0.1 s-1 | This paper | |
| The rate of losing phosphorylated sub- unit y | 0.1 s-1 | This paper | |
| vt | Turnover rate of CaMKII | 30 h-1 | (Ehlers, 2003; Miller et al., 2005) |
| DPP1 | Diffusion coefficient of PP1 | 0.5 µm2 s−1 | This paper and (Harvey et al., 2008) |
| Dsub | Diffusion coefficient of CaMKII subunits | 10-5 – 10µm2 s−1 | This paper |