Table 6:
Brain parcellations (of use for connectomic analyses) suitable for / available within Lead-DBS.
| Atlas Name | Pre- installed in Lead- DBS |
Source(s) of Information |
Structures of Focus / Specialities | Publication(s) |
|---|---|---|---|---|
| Whole Brain | ||||
| Harvard-Oxford cortical/subcortical atlases | + | Manual segmentations | Whole Brain | Makris et al. 2006, Frazier et al. 2005, Desikan et al. 2006, Goldstein et al. 2007 |
| MICCAI 2012 Multi-Atlas Labeling Workshop and Challenge (Neuromorphometrics) | + | Manual segmentations | Whole Brain | neuromorphometrics.com |
| Brainnetome Atlas parcellation | + | fMRI, dMRI | Whole Brain | Fan et al. 2016 |
| Automated Anatomical Labeling (v2) | + | MRI | Whole Brain | Tzourio-Mazoyer et al. 2002 |
| AICHA: An atlas of intrinsic connectivity of homotopic areas | + | fMRI | Whole Brain | Joliot et al. 2015 |
| Hammers_mith Atlas | + | MRI | Whole Brain, special focus on temporal lobe | Hammers et al. 2003, Gousias et al. 2008 |
| PrAGMATiC | − | fMRI | Functional atlas based on task fMRI | Huth et al. 2016, Huth et al. 2015 |
| fMRI-based random parcellations | + | fMRI | Fine-grained random parcellations informed by rs-fMRI data | Craddock et al. 2012 |
| Voxelwise parcellations | + | MRI | Whole Brain | Horn & Kühn 2015 |
| Cortex Focus | ||||
| Mindboggle 101 | + | Manual segmentations | Cortex / Desikan protocol | Klein et al. 2012 |
| Yeo functional parcellations | + | fMRI | Cortex | Yeo et al. 2011 |
| Local-Global Parcellation of the Human Cerebral Cortex | + | fMRI | Cortex, refining Yeo 2011 parcellations | Schaefer et al. 2017 |
| Cortical Area Parcellation from Resting-State Correlations | + | rs-fMRI | Cortex | Gordon et al. 2016 |
| HCP MMP 1.0 | − | Multimodal | Cortex, surface maps | Glasser et al. 2016 |
| Desikan-Killiany Atlas | − | Gyrification related ROI | Cortex, surface maps | Desikan et al. 2006 |
| Destrieux Atlas | − | Gyrification related ROI | Cortex, surface maps | Destrieux et al. 2010, Fischl et al. 2004 |
| MarsAtlas | − | Gyrification related ROI | Cortex, surface maps | Auzias et al. 2016, Auzias et al. 2013 |
| Specific Subregions | ||||
| JuBrain / Juelich histological atlas | + | Histology | Specific regions | Zilles et al. 2010, Amunts et al. 2007, Eickhoff et al. 2005, Eickhoff et al. 2010, Eickhoff et al. 2006bp |
| Human Motor Area Template | + | fMRI / Metaanalysis | (Pre-) motor cortex | Mayka et al. 2006 |
| Sensorimotor Area Tract Template | + | dMRI | Corticospinal tract subregions | Archer et al. 2017 |
| SUIT cerebellar parcellation | + | MRI | Cerebellum |
Diedrichsen et al. 2006, Diedrichsen et al. 2011 |
| Buckner functional cerebellar parcellation | + | fMRI | Same networks as in Yeo 2011 cortical parcellations defined in cerebellum | Buckner et al. 2011 |