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. Author manuscript; available in PMC: 2018 Dec 7.
Published in final edited form as: Living J Comput Mol Sci. 2018 Oct 27;1(1):5067. doi: 10.33011/livecoms.1.1.5067

Figure 2.

Figure 2.

RMSD as a measure of convergence. The upper panel shows the α-carbon RMSD of the protein rhodopsin from its starting structure as a function of time. The lower panel shows the all-to-all RMSD map computed from the same trajectory. Color scale is the RMSD, in Å. Data from Ref. [21].