Table 2.
Lead SNPs from Functional Mapping and Annotation of Genome-Wide Association Studies (FUMA) and corresponding functional annotation.
| rsID | Chr | Position | P-value | Nearest Gene | Distance from Gene | Function | CADD Score | RDB |
|---|---|---|---|---|---|---|---|---|
| rs145005509 | 1 | 244472953 | 5.73E-06 | C1orf100 | 42984 | intergenic | 11.47 | 7 |
| rs10788734 | 1 | 248075398 | 6.26E-06 | OR2T8 | 8922 | intergenic | 1.717 | 7 |
| rs72806266 | 2 | 59501865 | 7.42E-06 | ENSG00000233891 | 0 | ncRNA_intronic | 0.442 | 6 |
| rs112834343 | 2 | 224599695 | 7.22E-07 | AP1S3 | 16708 | intergenic | 4.525 | 6 |
| rs17033567 | 3 | 10913738 | 5.65E-06 | SLC6A11 | 0 | intronic | 2.597 | 7 |
| rs2336522 | 3 | 22023520 | 5.40E-06 | ZNF385D-AS2 | 2200 | intergenic | 0.718 | 7 |
| rs112368179 | 3 | 133217908 | 8.09E-06 | ENSG00000214301 | 7559 | intergenic | 5.85 | 5 |
| rs75536499 | 4 | 536426 | 6.58E-07 | PIGG | 3108 | intergenic | 0.127 | 5 |
| rs115496994 | 4 | 86353705 | 6.92E-06 | ARHGAP24 | 42562 | intergenic | 7.664 | 7 |
| rs10020261 | 4 | 184171187 | 2.57E-06 | WWC2 | 0 | intronic | 8.42 | 4 |
| rs4869281 | 5 | 95651353 | 6.84E-06 | CTD-2337A12.1 | 0 | ncRNA_intronic | 3.662 | 3a |
| rs75886551 | 6 | 51028172 | 8.77E-06 | FTH1P5 | 147203 | intergenic | 0.435 | 4 |
| rs11465543 | 6 | 52108584 | 2.41E-06 | IL17F | 0 | intronic | 2.813 | NA |
| rs76563242 | 6 | 88277132 | 3.24E-06 | RARS2 | 0 | intronic | 0.719 | 7 |
| rs62421504 | 6 | 113654797 | 5.24E-06 | ENSG00000223811 | 23408 | intergenic | 0.663 | 7 |
| rs206972 | 6 | 167689552 | 3.11E-06 | UNC93A | 0 | intronic | 0.043 | 6 |
| rs73133463 | 7 | 55119501 | 9.18E-06 | EGFR | 0 | intronic | 3.336 | 5 |
| rs2100160 | 8 | 427140 | 5.35E-06 | ENSG00000272005 | 0 | ncRNA_exonic | 0.355 | NA |
| rs16905012 | 8 | 134905738 | 8.65E-06 | RP11–157E21.1 | 0 | ncRNA_intronic | 4.592 | 7 |
| rs11777857 | 8 | 138546064 | 3.35E-06 | ENSG00000254076 | 162903 | intergenic | 3.359 | 5 |
| rs28373932 | 9 | 139998042 | 4.94E-06 | MAN1B1 | 0 | intronic | 4.023 | 5 |
| rs76238752 | 10 | 16614401 | 3.30E-06 | RSU1 | 18209 | intergenic | 6.354 | 7 |
| rs10825405 | 10 | 56592865 | 7.00E-06 | PCDH15 | 0 | intronic | 1.107 | 5 |
| rs75752490 | 10 | 67293784 | 3.05E-06 | ENSG00000228065 | 36312 | intergenic | 5.932 | 6 |
| rs61866256 | 10 | 85682627 | 5.53E-07 | ENSG00000233258 | 9949 | intergenic | 4.181 | 7 |
| rs7076325 | 10 | 101868347 | 5.73E-06 | TPM4P1 | 5827 | intergenic | 0.899 | 6 |
| rs184338590 | 10 | 109779481 | 4.11E-06 | RP11–215N21.1 | 0 | ncRNA_intronic | 3.103 | 7 |
| rs75794081 | 11 | 71069255 | 5.39E-06 | AP002387.1 | 24392 | intergenic | 1.829 | 5 |
| rs41287003 | 13 | 41910631 | 9.71E-06 | NAA16 | 0 | intronic | 5.577 | 7 |
| rs9547398 | 13 | 86417640 | 3.01E-06 | SLITRK6 | 44017 | intergenic | 2.744 | 7 |
| rs1016246 | 14 | 26679400 | 2.42E-06 | CYB5AP5 | 1770 | intergenic | 2.935 | NA |
| rs116879015 | 15 | 45492952 | 1.51E-06 | SHF | 0 | exonic | 7.285 | 4 |
| rs146087183 | 16 | 57934080 | 2.83E-06 | CNGB1 | 0 | intronic | 1.436 | 4 |
| rs7214066 | 17 | 4678855 | 3.89E-06 | TM4SF5 | 0 | intronic | 2.927 | 7 |
| rs146298733 | 18 | 4114529 | 3.16E-07 | DLGAP1 | 0 | intronic | 2.39 | 7 |
Chr=chromosome; CADD=Combined Annotation Dependent Depletion; RBD=RegulomeDB