Table 2.
ADH and ALDH2 allele frequencies
ADH1B*2 | ADH1B*3 | ADH1C*1 | ALDH2*2 | |||
---|---|---|---|---|---|---|
rs1229984 | rs2066702 | rs1693482** | rs671 | |||
Position | 4:99,318,162 | 4:100,229,017 | 4:99,304,835 | 12:111,803,962 | ||
Genome Allele | T | A | C | A | ||
RNA Allele | A | T | G | A | ||
Amino acid | His48 | Cys370 | Arg272 | Lys504 | ||
Group | Code | Population | ||||
AFR | ACB | African Carribbeans in Barbados | 0.010 | 0.193 | 0.891 | 0.005 |
AFR | ASW | Americans of African Ancestry in SW USA | 0.205 | 0.861 | ||
AFR | ESN | Esan in Nigera | 0.273 | 0.929 | ||
AFR | GWD | Gambian in Western Divisons in The Gambia | 0.142 | 0.912 | 0.004 | |
AFR | LWK | Luhya in Webuye, Kenya | 0.141 | 0.859 | ||
AFR | MSK | Mende in Sierra Leone | 0.088 | 0.906 | ||
AFR | YRI | Yoruba in Ibadan, Nigera | 0.282 | 0.926 | ||
AMR | CLM | Colombians from Medellin, Colombia | 0.074 | 0.755 | ||
AMR | MXL | Mexican Ancestry from Los Angeles USA | 0.086 | 0.719 | 0.008 | |
AMR | PEL | Peruvians from Lima, Peru | 0.012 | 0.824 | 0.006 | |
AMR | PUR | Puerto Ricans from Puerto Rico | 0.063 | 0.635 | ||
ASN | CDX | Chinese Dai in Xishuangbanna, China | 0.634 | 0.887 | 0.043 | |
ASN | CHB | Han Chinese in Bejing, China | 0.709 | 0.951 | 0.160 | |
ASN | CHS | Southern Han Chinese | 0.757 | 0.929 | 0.271 | |
ASN | JPT | Japanese in Tokyo, Japan | 0.731 | 0.928 | 0.240 | |
ASN | KHV | Kinh in Ho Chi Minh City, Vietnam | 0.646 | 0.919 | 0.136 | |
EUR | CEU | Utah Residents (CEPH) with Northern and Western European ancestry | 0.015 | 0.525 | ||
EUR | FIN | Finnish in Finland | 0.490 | |||
EUR | GBR | British in England and Scotland | 0.005 | 0.560 | ||
EUR | IBS | Iberian population in Spain | 0.065 | 0.692 | ||
EUR | TSI | Toscani in Italia | 0.051 | 0.692 | ||
SAN | BEB | Bengali from Bangladesh | 0.017 | 0.820 | ||
SAN | GIH | Gujarati Indian from Houston, Texas | 0.024 | 0.718 | ||
SAN | ITU | Indian Telugu from the UK | 0.015 | 0.765 | ||
SAN | PJL | Punjabi from Lahore, Pakistan | 0.042 | 0.672 | ||
SAN | STU | Sri Lankan Tamil from the UK | 0.005 | 0.662 |
Allele corresponding to the variant noted is shown on the genomic reference strand and in the RNA (note that the ADH transcripts run in the opposite direction). Positions are on the GRCh38/hg38 human genome assembly. Data are from the 1000 genomes project, Phase 3 (The 1000 Genomes Project Consortium et al., 2015). Blanks are <0.001. Groups: AFR = African, AMR=American, ASN=East Asian, EUR=European, SAN=South Asian. Code: 3 letter identifier for population.
Frequencies are identical to the more frequently studied SNP rs698 (genome C, RNA G, Val350), except that for rs698, YRI=0.931, ITU= 0.760. For data on a wider range of populations and SNPs, see the alfred database https://alfred.med.yale.edu (Rajeevan et al., 2012).