TABLE 1.
Structures of diadenylate cyclases and phosphodiesterases and their domains
| PDB ID | Enzyme | Domain(s) or mutation(s) | Ligand(s) | Metal ion | Reference |
|---|---|---|---|---|---|
| 3C1Z | DisA | DAC | None | None | 5 |
| 3C23 | DisA | DAC | 3′-dATP | None | 5 |
| 4YVZ | DisA | DAC | 3′-dATP | Mn2+ | 50 |
| 3C1Y | DisA | DAC | c-di-AMP | None | 5 |
| 4YXJ | DisA | DAC | ApCpp | None | 50 |
| 4RV7 | CdaA | DAC | ATP | Mg2+ | 43 |
| 2FB5 | CdaS | DAC | None | None | Unpublished data a |
| 2M1C | GdpP | PAS | None | None | 82 |
| 5XSI | GdpP | DHH-DHHA1 | None | Mn2+ | 107 |
| 5XSN | GdpP | DHH-DHHA1 | c-di-AMP | Mn2+ | 107 |
| 5XSP | GdpP | DHH-DHHA1 | 5′-pApA | Mn2+ | 107 |
| 5XT3 | GdpP | DHH-DHHA1 | c-di-GMP | Mn2+ | 107 |
| 5JJU | DhhP | DHH-DHHA1 | 5′-pApA and 5′-AMP | Mn2+ | 93 |
| 5O25 | DhhP | DHH-DHHA1 | None | Mn2+ | 89 |
| 5O58 | DhhP | DHH-DHHA1 | 5′-pApG | Mn2+ | 89 |
| D80N, D154N | |||||
| 5O70 | DhhP | DHH-DHHA1 | 5′-AMP | Mn2+ | 89 |
| D80N, D154N | |||||
| 5O1U | DhhP | DHH-DHHA1 | 5′-AMP | Mn2+ | 89 |
| 5O4Z | DhhP | DHH-DHHA1 | 5′-AMP | Mn2+ | 89 |
| D80N, D154N | |||||
| 5O7F | DhhP | DHH-DHHA1 | 5′-GMP | Mn2+ | 89 |
| 4S1B | PgpH | HD | c-di-AMP | Fe3+ | 96 |
| 4S1C | PgpH | HD | None | Fe3+ | 96 |
R. Zhang, M. Zhou, S. Ginell, J. Abdullah, F. Collart, and A. Joachimiak.