Figure 1. Workflow in RIP-MD.
(A) input of structural information and analyses parameters. (B) Pre-processing step. (C) Definition of interactions (Cα contacts, H-bonds, Salt bridges, disulfide bonds, cation-π, π–π, Arginine–Arginine, Coulomb, and van der Waals contacts) according to the input parameters. (D) Generation of RIN and output files.