Table 2.
Selected SNPs significantly associated with PCa aggressiveness (GS ≥8 versus GS≤6 or D’Amico high versus low) and GS 4 + 3 = 7 risk.
GS≥8 vs. GS≤6 |
GS 4 + 3 vs. GS 3 + 4 |
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---|---|---|---|---|---|---|---|
Gene | SNP | Location | Model | OR (95% CI)c | P value | OR (95% CI)c | P value |
NFATC1 | rs25656 | Coding, 3ʹUTRa | REC | 0.40 (0.19–0.85) | 0.017 | 0.31 (0.15–0.62) | 0.001 |
NFATC1 | rs160189b | Intron | REC | 0.44 (0.19–0.99) | 0.048 | 0.30 (0.15–0.61) | 0.001 |
MAP3K1 | rs187899492 | Intron | DOM | 3.76 (1.44–9.81) | 0.007 | 2.89 (1.42–5.88) | 0.003 |
TRAF2 | rs6560652 | Intron | DOM | 0.58 (0.36–0.91) | 0.018 | 0.63 (0.45–0.88) | 0.007 |
CD48 |
rs10489639 |
Intron |
ADD |
0.72 (0.53–0.97) |
0.033 |
0.74 (0.59–0.94) |
0.012 |
D’Amico high vs. low |
GS 4 + 3 vs. GS 3 + 4 |
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Gene |
SNP |
Location |
Model |
OR (95% CI)d |
P value |
OR (95% CI)c |
P value |
NFATC1 | rs25656 | Coding, 3ʹUTRa | REC | 0.51 (0.29–0.90) | 0.021 | 0.31 (0.15–0.62) | 0.001 |
NFATC1 | rs160189a | Intron | REC | 0.51 (0.28–0.91) | 0.024 | 0.30 (0.15–0.61) | 0.001 |
RHOA | rs11706370 | Intron | REC | 0.47 (0.25–0.89) | 0.021 | 0.55 (0.30–0.99) | 0.048 |
CASP8 | rs36039030 | Intron | DOM | 0.30 (0.09–0.98) | 0.047 | 0.29 (0.09–0.99) | 0.048 |
aLocation varied depending on transcript isoforms. Most contain synonymous SNP involving Pro662/Pro649.
Minor transcript contains either nonsynonymous SNP His>Arg at codon 634 or 3ʹUTR SNP.
bSNP in high linkage disequilibrium (r2 > 0.8) with rs25656.
cModels adjusted for age, clinical T stage and PSA level at diagnosis.
dModels adjusted for age and PSA level at diagnosis.