Table 3. Haplotype-nucleotide diversity and neutrality tests of three cluster of E18 as calculated for the VP1 gene.
| Haplotype- nucleotide diversity | Neutrality tests | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Cluster | n | h | h:n | Hd±SD | π±SD | K | S | Tajima’s D | Fu-Li’s F |
| RED-I | 19 | 12 | 0.6:1 | 0.92± 0.05 | 0.03± 0.01 | 11.3 | 67 | -1.80* | -2.97* |
| Green-II | 7 | 7 | 1:1 | 1.0± 0.08 | 0.07± 0.01 | 61.9 | 165 | -0.57 | -0.56 |
| Blue-III | 10 | 9 | 0.9:1 | 1.0± 0.05 | 0.06± 0.01 | 55.2 | 171 | -0.93 | -1.12 |
| Total | 41 | 34 | 0.9:1 | 0.98± 0.01 | 0.12± 0.02 | 35.5 | 184 | -1.50 | -2.80 |
n: Number of sequences, h: Number of Haplotypes, Hd: Haplotype (gene) diversity, π: Nucleotide diversity (per site), K: Average number of nucleotide differences between two randomly chosen sequences from within in the population, S: Number of variable/segregating sites. (1 outgroup, 4 have no clear cluster).
*: P<0.01.