Table 4. Haplotype/nucleotide diversity and neutrality tests of three cluster of CVB5 as calculated for the VP1 gene.
| Haplotype nucleotide diversity | Neutrality tests | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Cluster | n | h | n:h | Hd±SD | π±SD | K | S | Tajima’s D | Fu-Li’s F |
| Blue-I | 14 | 14 | 1:1 | 1.0± 0.03 | 0.13± 0.009 | 89.3 | 89 | 0.05 | 0.36 |
| Green-II | 13 | 13 | 1:1 | 1.0± 0.03 | 0.10± 0.01 | 28.3 | 74 | -0.257 | -0.27 |
| RED-III | 19 | 18 | 1:1 | 0.94± 0.02 | 0.08± 0.007 | 24.3 | 75 | -0.55 | -1.13 |
| Total | 46 | 45 | 1:1 | 0.99± 0.006 | 0.17± 0.01 | 41.04 | 133 | -0.75 | -1.76 |
n: Number of sequences, h: Number of Haplotypes, Hd: Haplotype (gene) diversity, π: Nucleotide diversity (per site), K: Average number of nucleotide differences between two randomly chosen sequences from within in the population, S: Number of variable/segregating sites. (1 outgroup, 4 have no clear cluster)