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. 2018 Dec 10;13(12):e0208534. doi: 10.1371/journal.pone.0208534

Table 2. Prevalencey, univariable OR’s (95% CI) for potential predictors of 3 months DAS28>3.2 insufficient response for derivation and validation cohorts.

Predictors Derivation cohort Validation cohort
n (%) OR (95% CI) n (%) OR (95% CI)
Female 201 (71) 1.70 (0.99–2.91)* 72 (71) 2.29 (0.80–6.59)*
Age > 40 year 239 (84) 1.76 (0.89–3.50)* 78 (77) 1.44 (0.49–4.28)
Medication
No HCQ 98 (38) 1.47 (0.87–2.48)* 53 (53) 1.05 (0.43–2.54)
No Sulfasalazine 99 (38) 1.42 (0.84–2.40)* 59 (58) 1.51 (0.61–3.77)
No TDT 99 (38) 1.42 (0.84–2.40)* 69 (68) 1.24 (0.47–3.26)
GC 242 (93) 1.68 (0.56–4.98) 14 (14) 2.22 (0.55–8.98)
No IM-GC 160 (62) 1.42 (0.82–2.46) 11 (11) 0.61 (0.04–10.07)
NSAID 37 (14) 1.53 (0.69–3.41) 36 (36) 1.69 (0.67–4.26)
SNPs (MAF)
ABCB1 rs1045642 G>A (A = 0.3952) AA vs GG/GA 190 (73) 1.77 (0.99–3.18)* 64 (67) 2.08 (0.71–6.06)*
ABCB1 rs1128503 G>A (A = 0.4161) AA vs GG/GA 217 (83) 1.49 (0.76–2.95) 73 (77) 1.21 (0.37–3.93)
ABCB1 rs2032582 C>A/T (A = 0.3343) AA/AT/TT vs CC/CA/CT 208 (79) 1.70 (0.90–3.22)* 72 (76) 0.96 (0.31–2.97)
ABCC1 rs35592 T>C (C = 0.3704) TC/CC vs TT 163 (62) 1.05 (0.63–1.75) 55 (58) 0.95 (0.37–2.43)
ABCC1 rs3784862 A>G (G = 0.4155) AG/GG vs AA 153 (58) 1.05 (0.63–1.75) 43 (45) 0.52 (0.20–1.36)*
ABCC2 rs717620 C>T (T = 0.1350) CC vs CT/TT 74 (28) 1.30 (0.75–2.25) 30 (32) 0.77 (0.28–2.11)
ABCC2 rs4148396 C>T (T = 0.3147) CC/CT vs TT 35 (13) 1.46 (0.71–3.01) 10 (11) 1.47 (0.30–7.10)
ABCC3 rs3785911 A>C (C = 0.2452) AC/CC vs AA 134 (51) 1.28 (0.78–2.11) 45 (47) 1.41 (0.55–3.59)
ABCC3 rs4793665 T>C (C = 0.3313) TT vs TC/CC 173 (66) 2.02 (1.17–3.49)* 68 (72) 0.36 (0.13–1.00)*
ABCC4 rs868853 T>C (C = 0.1757) TT vs TC/CC 38 (14) 1.21 (0.60–2.45) 20 (21) 1.53 (0.53–4.43)
ABCC4 rs2274407 C>A (A = 0.1506) CA/AA vs CC 232 (88) 1.09 (0.50–2.38) 81 (85) 0.59 (0.16–2.14)
ABCC5 rs2139560 G>A (A = 0.3027) AA vs GG/GA 212 (81) 1.52 (0.79–2.90) 78 (82) 1.23 (0.34–4.44)
ABCG2 rs2231142 G>T (T = 0.1194) GT/TT vs GG 204 (78) 1.54 (0.83–2.87)* 78 (82) 7.15 (0.87–58.73)*
ABCG2 rs13120400 T>C (C = 0.1052) TT vs TC/CC 110 (42) 1.08 (0.65–1.79) 37 (39) 1.56 (0.61–4.02)
ADA rs73598374 C>T (T = 0.0513) CC vs CT/TT 33 (13) 1.68 (0.80–3.54)* 13 (14) 1.22 (0.36–4.18)
ADORA2A rs5751876 C>T (C = 0.4423) TT vs CC/CT 213 (81) 1.17 (0.62–2.22) 81 (85) 0.18 (0.04–0.76)*
AMPD1 rs17602729 G>A (A = 0.0381) GG vs GA/AA 45 (17) 1.49 (0.78–2.86) 17 (18) 0.46 (0.12–1.80)
ATIC rs2372536 C>G (G = 0.2778) GG vs CC/CG 226 (86) 1.69 (0.79–3.61)* 86 (91) 4.14 (0.48–35.53)*
FOLR2 rs514933 T>C (C = 0.4285) TT/TC vs CC 42 (16) 1.24 (0.63–2.43) 16 (17) 1.06 (0.32–3.55)
FPGS rs4451422 A>C (C = 0.4643) AA/AC vs CC 61 (23) 1.46 (0.80–2.66) 19 (20) 1.73 (0.59–5.07)
GGH rs3758149 G>A (A = 0.2316) GG vs GA/AA 137 (52) 1.58 (0.95–2.61)* 41 (43) 0.90 (0.35–2.30)
GGH rs10106587 A>C (C = 0.2576) AC/CC vs AA 134 (51) 1.02 (0.62–1.69) 43 (45) 0.77 (0.30–1.99)
ITPA rs1127354 G>T (A = 0.0895) GT/TT vs GG 229 (87) 1.04 (0.50–2.16) 79 (83) 1.07 (0.29–3.94)
MTHFR rs1801131 A>C (G = 0.2494) AA vs AC/CC 139 (53) 1.37 (0.83–2.27) 42 (44) 0.97 (0.38–2.49)
MTHFR rs1801133 C>T (A = 0.2454) CT/TT vs CC 125 (48) 1.61 (0.97–2.66)* 55 (58) 0.68 (0.26–1.77)
MTRR rs1801394 A>G (G = 0.3642) GG vs AA/AG 174 (66) 1.45 (0.85–2.47)* 67 (71) 0.52 (0.19–1.44)
SLC19A1 rs1051266 C>T (C = 0.4886) TT vs CC/CT 220 (84) 1.48 (0.73–2.98) 77 (81) 2.20 (0.56–8.69)
SLC46A1 rs2239907 C>T (T = 0.4515) CC/CT vs TT 52 (20) 1.94 (1.04–3.60)* 13 (14) 1.30 (0.33–5.09)
Metabolic parameters
Erythrocyte-folate<750 nmol/L 74 (37) 1.48 (0.82–2.69)* 14 (14) 2.80 (0.80–9.79)*
Serum-folate<13 nmol/L 57 (24) 1.43 (0.77–2.66) 25 (25) 0.95 (0.33–2.74)
Plasma homocysteine>14 μmol/L 64 (27) 1.16 (0.64–2.11) 34 (34) 1.10 (0.43–2.81)
Serum vitamin B6<80 nmol/L 103 (50) 1.40 (0.80–2.47) 57 (58) 1.23 (0.50–3.03)
Serum vitamin B12>400 pmol/L 61 (26) 1.11 (0.61–2.03) 20 (20) 2.30 (0.78–6.82)*
eGFR<80 ml/min/1.73m2 63 (53) 1.43 (0.67–3.03) 39 (38) 1.35 (0.55–3.32)
Disease activity
ESR>40 mm/hour 73 (26) 2.77 (1.58–4.85)* 18 (18) 1.83 (0.61–5.50)
CRP>10 mg/L 125 (44) 1.37 (0.74–2.54) 31 (30) 0.81 (0.31–2.13)
TJC>3 joints 221 (80) 3.81 (1.95–7.43)* 58 (57) 3.78 (1.44–9.97)
SJC>3 joints 229 (80) 2.05 (1.08–3.89)* 55 (54) 1.50 (0.62–3.64)
VAS>34 mm 215 (75) 3.82 (2.00–7.32)* 77 (76) 1.44 (0.49–4.58)
DAS28>5.1 125 (44) 3.70 (2.23–6.16)* 25 (25) 5.96 (1.98–17.93)*
HAQ>0.6 217 (76) 2.80 (1.51–5.18)* 88 (86) 1.27 (0.35–4.63)
Rheumatoid factor negative 85 (34) 1.58 (0.92–2.72)* 55 (59) 0.96 (0.38–2.47)
Anti-CCP negative 75 (30) 1.41 (0.81–2.46) 55 (59) 1.68 (0.65–4.37)
Disease duration>145 days 143 (51) 1.10 (0.68–1.78) ** **
Life style
Smoking 87 (33) 2.01 (1.19–3.41)* ** **
Alcohol consumption<30 glasses/month 191 (73) 1.47 (0.84–2.58)* 34 (76) 2.25 (0.39–13.17)
Cola consumption>30 glasses/month 33 (13) 1.28 (0.62–1.67) 16 (16) 1.64 (0.53–5.08)
Coffee consumption<90 glasses/month 117 (45) 1.11 (0.68–1.83) 50 (51) 1.19 (0.48–2.93)
Tea consumption>90 glasses/month 57 (22) 1.58 (0.87–2.88)* 20 (20) 0.19 (0.04–0.90)*
BMI>25 kg/m2 157 (56) 1.70 (1.04–2.79)* ** **

*Variables significantly associated with MTX non-response (p<0.200) in the derivation cohort were included in the multivariate backward logistic regression analysis;

**not determined;

HCQ, hydroxychloroquine; TDT, triple disease-modifying antirheumatic drug therapy; GC, glucocorticoids; IM, intramuscular; NSAID, non-steroidal anti-inflammatory drugs; ABCB1, Adenosine triphosphate-binding cassette transporter B1; ADA, adenosine-deaminase; ADORA2A, adenosine A2A receptor; AMPD1, adenosine monophosphate deaminase 1; ATIC, 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; FOLR2, Folate receptor 2; FPGS, folylpolyglutamate synthetase; GGH, γ-glutamyl hydrolase; ITPA, inosine triphosphatase; MTHFR, methylenetetrahydrofolate reductase; MTRR, methionine synthase reductase; SLC19A1, solute carrier 19A1; eGFR, estimated glomerular filtration rate; TJC, tender joint score in 28 joints; SJC, swollen joint score in 28 joints; HAQ, health assement questionnaire; CCP, cyclic citrulinated peptide; BMI, body mass index; MAF, Global minor allele frequency in NCBI SNP database.