Table 3. Lists of genomes of species of the Mitis Group of the genus Streptococcus, used for matching the proteomic data at two different time points.
Two databases were used, created in February 2015 (“Initial Database”) and August 2016 (“Curated Database”). The (T) denotes the presence of the Type strain genome of a given species in the database.
| Organism | “Initial Database” Before addition of reference genomes |
“Curated Database” After addition of reference genomes |
|---|---|---|
| Streptococcus australis | 0 | 1 (T) |
| Streptococcus cristatus | 0 | 1 (T) |
| Streptococcus gordonii | 1 | 3 (T) |
| Streptococcus infantis | 0 | 1 (T) |
| Streptococcus mitis | 1 | 30 (T) |
| Streptococcus oligofermentans* | 1 (T) | 1 (T) |
| Streptococcus oralis+ | 1 (T) | 13 (T) |
| Streptococcus parasanguinis | 2 (T) | 3 (T) |
| Streptococcus peroris | 0 | 1 (T) |
| Streptococcus pneumoniae | 27 | 31 (T) |
| Streptococcus pseudopneumoniae | 1 | 6 (T) |
| Streptococcus sanguinis | 1 | 6 |
| Streptococcus sinensis | 0 | 1 (T) |
| Streptococcus tigurinus* | 0 | 4 (T) |
| Sum of Mitis Group genomes | 35 | 102 |
| Ψ Streptococcus pyogenes | 19 | 47 |
*S. oligofermentans is considered to be a later heterotypic synonym of S. cristatus and S. tigurinus is considered to be a subspecies of S. oralis [29].
+S oralis subsp. tigurinus genomes, previously classified as S. tigurinus, are included as S. oralis, according to Jensen et al., 2016 [29]. The reference strain for the subspecies, S. oralis subsp. tigurinus AZ_3a is included in the database.
Ψ S. pyogenes is included here, as an out-group species, since this species was part of the model system.