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. 2018 Dec 4;9:2947. doi: 10.3389/fmicb.2018.02947

Table 2.

Model Comparison.

iMcBath BMID000000141026 iMb5G(B1)
Structure
Methane oxidation SMMOi, PMMOipp, PMMODCipp MNXR6057 pMMO
Growth on N-sources Urea, NO2, NO3, NH4, N2, Ala, Asn, Asp, Cys, Gln, Glt, Val No Growth NO3
Performance
ATP Production closed exchanges False True False
ATP Production rate – NH4 0.775 1000 1
ATP Production rate – NO3 0.365 1000 0.519
Growth rate – pMMO – NH4 0.300 No growth 0.34
Growth rate – pMMO – NO3 0.205 No growth 0.27
O2/CH4 Ratio – pMMO – NH4 1.434 No growth 1.156
O2/CH4 Ratio – pMMO – NO3 1.430 No growth 1.116
Specifications
Reactions without GPR 119 950 129
Enzyme complexes 43 0 0
Total # genes 730 589 313
Total # metabolites 879 935 403
Total # reactions 913 1858 402

The presented reconstruction iMcBath, the automated draft BMID000000141026 and iMb5G(B1), a genome-scale reconstruction of Methylomicrobium buryatense strain 5G(B1).