Table 1.
Cuticular hydrocarbons (CHCs) that showed significant intraspecific differences in accumulation due to having only a single allele within the region spanned by a deficiency (Df), i.e., due to being hemizygous
| CHC Name a | n -C21 | n -C22 | n -C23 | n -C24 | n -C25 | n -C27 | 9-T | 7-T | 5-T | 7-P | 5-P | 9-H | 7-H | 7-N | 9,13-PD | 7,11-PD | 9,13-HD | 7,11-HD | 7,11-ND | 23-Br | 25-Br | 26-Br | 27-Br | 29-Br | 31-Br | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Carbons b | 21 | 22 | 23 | 24 | 25 | 27 | 23 | 23 | 23 | 25 | 25 | 27 | 27 | 29 | 25 | 25 | 27 | 27 | 29 | 23 | 25 | 26 | 27 | 29 | 31 | ||
| Features b | – | – | – | – | – | – | 1D | 1D | 1D | 1D | 1D | 1D | 1D | 1D | 2D | 2D | 2D | 2D | 2D | B | B | B | B | B | B | ||
| Df c | Cyto.d | Genes e | |||||||||||||||||||||||||
| Df(3L)ED4457 [1] | 67E2;68A7 | 98 | *** | ||||||||||||||||||||||||
| Df(3L)ED4486 [2] | 69E6;69F6 | 49 | ** | ** | |||||||||||||||||||||||
| Df(3L)fz-GF3b | 70C1;70D2 | 45 | ** | ** | ** | ||||||||||||||||||||||
| Df(3L)ED4782 | 75F2;76A1 | 22 | **** | ** | |||||||||||||||||||||||
| Df(3L)XS533 [3] | 76B4;77B | 161 | ** | **** | *** | ** | |||||||||||||||||||||
| Df(3L)ri-79c | 77B;77F3 | 120 | *** | * | *** | ||||||||||||||||||||||
| Df(3L)BSC284 [4] | 78F1;79A3 | 16 | *** | * | *** | ||||||||||||||||||||||
| Df(3L)BSC223 [5] | 79B2 | 8 | *** | ||||||||||||||||||||||||
| Df(3L)BSC249 | 79B2 | 8 | **** | *** | |||||||||||||||||||||||
| Df(3L)ED5017 | 80A4;80C2 | 23 | *** | ** | **** | *** | *** | ** | |||||||||||||||||||
| Df(3R)ME15 | 81F3;82F4 | 101 | **** | **** | *** | ||||||||||||||||||||||
| Df(3R)3-4 | 82F5;82F7 | 15 | ** | ||||||||||||||||||||||||
| 82F8;82F10 | 8 | ** | |||||||||||||||||||||||||
| Df(3R)ED5156 | 82F8;82F10 | 8 | * | ||||||||||||||||||||||||
| 82F10;83A4 | 26 | ** | * | ||||||||||||||||||||||||
| Df(3R)Exel6144 | 83A6;83B3 | 14 | ** | ||||||||||||||||||||||||
| Df(3R)ED5177 [7] | 83B6 | 5 | * | ||||||||||||||||||||||||
| Df(3R)p712 | 84D4;85A4 | 159 | * | ||||||||||||||||||||||||
| Df(3R)ED5330 [8] | 85A5;85D1 | 83 | **** | ||||||||||||||||||||||||
| Df(3R)BSC38 | 85F1;86C1 | 69 | ** | ||||||||||||||||||||||||
| Df(3R)M-Kx1 | 86C7;86D8 | 61 | * | ||||||||||||||||||||||||
| 86D9;87B5 | 139 | **** | **** | ||||||||||||||||||||||||
| Df(3R)T-32 [9] | 86D9;87B5 | 139 | **** | ** | |||||||||||||||||||||||
| 87B1;87C1 | 82 | * | **** | **** | *** | ** | * | ||||||||||||||||||||
| Df(3R)ED5644 | 88A4;88C9 | 77 | **** | *** | |||||||||||||||||||||||
| Df(3R)ED5664 | 88D1;88E3 | 57 | * | **** | |||||||||||||||||||||||
| Df(3R)BSC471 [10[ | 88E3;88E5 | 9 | *** | * | *** | *** | **** | ** | *** | ** | |||||||||||||||||
| Df(3R)P115 | 89B7;89E7 | 97 | * | ** | |||||||||||||||||||||||
| Df(3R)ED5780 | 89E11;89F4 | 31 | **** | ||||||||||||||||||||||||
| Df(3R)Cha7 [11] | 91B1;91F1 | 71 | *** | **** | * | *** | *** | * | *** | ||||||||||||||||||
| 91F1;91F5 | 14 | *** | ** | ||||||||||||||||||||||||
| Df(3R)Dl-BX12 [12] | 91F1;91F5 | 14 | ** | ** | |||||||||||||||||||||||
| 91F6;92B3 | 63 | *** | |||||||||||||||||||||||||
| Df(3R)e-R1 [14] | 93B6;93C5 | 31 | ** | ||||||||||||||||||||||||
| Df(3R)e-GC3 | 93D3;94A4 | 119 | ** | ** | |||||||||||||||||||||||
| Df(3R)BSC56 | 94E1;94E9, 94F1;94F2 | 30 | ** | ** | |||||||||||||||||||||||
| Df(3R)Exel9012 [15] | 94E9;94E13 | 15 | ** | ||||||||||||||||||||||||
| Df(3R)crb87-5 | 96A7 | 3 | *** | ||||||||||||||||||||||||
| Df(3R)ED6220 [19] | 96A18;96C3 | 94 | *** | *** | *** | * | ** | ||||||||||||||||||||
| Df(3R)Exel6203 [20] | 96E2;96E6 | 9 | * | * | |||||||||||||||||||||||
| Df(3R)BSC321 | 96E6;96E9 | 13 | *** | ** | *** | * | |||||||||||||||||||||
| Df(3R)BSC140 [21] | 96F1 | 2 | * | *** | *** | ||||||||||||||||||||||
| Df(3R)3450 | 98E3;99A8 | 82 | **** | **** | ** | ||||||||||||||||||||||
| Df(3R)BSC547 [22] | 99B5;99B6 | 5 | ** | *** | *** | ||||||||||||||||||||||
| Df(3R)L127 | 99C8;99E4 | 65 | **** | * | |||||||||||||||||||||||
| Df(3R)B81 | 99C8;99E4 | 65 | *** | *** | |||||||||||||||||||||||
| 99E4;100E1 | 181 | ** | *** | ||||||||||||||||||||||||
| Df(3R)ED50003 [23] | 100E1;100F5 | 6 | *** | *** | * | ** |
aCHC name abbreviations are shown; full names can be found in the legend of Fig. 2. The primary compounds that have historically been studied in this species pair have their name underlined
bCHCs are ordered based on the number of carbons within the chain and whether the compound is a simple chain with no defining features (-), has one (1D) or two (2D) double bonds, or a branch in the carbon chain (B) with a 2-methyl group. Note that no lines were significant for compounds 6-T, 7,11-He + D, or n-C29, and so those columns are not shown
cThe italicized number in brackets [#] next to the deficiency name is the same as that overlaid on the biochemical pathway in Fig. 4, and is shown to facilitate comparison. Numbering is based on compounds listed in Table 2, and thus in Table 1 not all deficiencies have a number and not all numbers are listed
dThe cytological region (Cyto.) underlying the significant effect was determined through comparison among overlapping significant and/or non-significant deficiencies. Since cytological breakpoints are not precise for all deficiencies, in some cases we assumed that the significant region was at the margin where a significant and non-significant deficiency both ended. Note that some deficiencies are divided into multiple rows, where the region of overlap indicates that some compounds are affected by one region of the deficiency, while others are affected by a different region. CHCs that had a significant change due to hemizygosity for that region have their P-value represented by * ≤ 0.05, ** ≤ 0.005 *** ≤ 0.0005 **** ≤ 0.0001; all others were not statistically significant. Compounds that significantly increased in sim/Df have their P-value representation underlined; those that decreased are not underlined
eThe number of protein-coding genes (Genes) within each region was determined using CytoSearch in FlyBase