Table 1.
Fish species selected for the phylogenetic analysis of Cyprinidae in the present study.
| No. | Scientific name | Subfamily classification∗ | Data type | Accession No.# |
|---|---|---|---|---|
| 1 | Hypophthalmichthys molitrix | Hypophthalmichthyinae | Transcriptome | SRR342398 |
| 2 | Hypophthalmichthys nobilis | Hypophthalmichthyinae | Transcriptome | SRR3036336 |
| 3 | Microphysogobio brevirostris | Gobioninae | Transcriptome | SRR1185341 |
| 4 | Gobio acutipinnatus | Gobioninae | Transcriptome | SRR1660441 |
| 5 | Xenocypris argentea | Xenocyprinae | Transcriptome | SRR5351748 |
| 6 | Culter ilishaeformis | Cultrinae | Transcriptome | SRR959086 |
| 7 | Anabarilius grahami | Cultrinae | Genome | PRJNA477399 |
| 8 | Ctenopharyngodon idella | Leuciscinae | Genome | PRJEB5920 |
| 9 | Tinca tinca | Leuciscinae | Transcriptome | SRR5997852 |
| 10 | Danio rerio | Danioninae | Genome | PRJNA11776 |
| 11 | Danio albolineatus | Danioninae | Transcriptome | SRR5451065 |
| 12 | Gymnodiptychus pachycheilus | Schizothoracinae | Transcriptome | SRR1583887 |
| 13 | Schizothorax richardsonii | Schizothoracinae | Transcriptome | SRR1552917 |
| 14 | Cyprinus carpio | Cyprininae | Genome | PRJNA202478 |
| 15 | Carassius auratus | Cyprininae | Transcriptome | SRR1038441 |
| 16 | Sinocyclocheilus grahami | Barbinae | Genome | PRJNA274017 |
| 17 | Sinocyclocheilus anshuiensis | Barbinae | Genome | PRJNA274017 |
| 18 | Labeo rohita | Labeoninae | Transcriptome | SRP012989 |
| 19 | Rhodeus uyekii | Acheilognathinae | Transcriptome | SRR2043486 |
∗The classification of subfamily was adopted from a previous report (Chen, 1998). #The accession numbers included the NCBI BioProject ID for the genome data and Sequence Read Archive (SRA) Run ID for the transcriptome data. Please note that the ID highlighted in bold referred to the genome data of A. grahami that we assembled in this study.