Table 2.
Technical validation of RNA-seq experiment by qPCR: list of validated genes, log2 of fold change values (log2FC) between high (H) and low (L) groups and Pearson correlations between expression values obtained from each technique.
| Gene | log2FC RNA-seq | log2FC qPCR | Pearson correlation | p-Value |
|---|---|---|---|---|
| ADIPOQ | 1.31 | 1.33 | 0.571 | 0.053 |
| ATF3 | -1.17 | -1.22 | 0.984 | 6.92 × 10-9 |
| CNOT10∗ | -0.25 | -0.14 | 0.642 | 0.024 |
| DCAF5∗ | -0.26 | 0.04 | 0.821 | 0.001 |
| DNAJA1∗ | -0.57 | -0.53 | 0.961 | 1.01 × 10-8 |
| EGR1 | -1.64 | -1.71 | 0.962 | 5.63 × 10-7 |
| ELOVL6 | 1.50 | 0.83 | 0.807 | 0.002 |
| FASN | 2.54 | 1.19 | 0.808 | 0.001 |
| FOS | -1.67 | -1.65 | 0.961 | 6.72 × 10-7 |
| GPHN∗ | -0.05 | -0.10 | 0.550 | 0.064 |
| ITGB6∗ | 0.12 | -0.18 | 0.758 | 0.004 |
| PFKFB3 | -1.10 | -0.67 | 0.981 | 1.83 × 10-8 |
| PLIN1 | 1.39 | 1.51 | 0.959 | 8.89 × 10-7 |
| SCD | 1.55 | 1.58 | 0.857 | 3.67 × 10-7 |
| SPP1 | -1.62 | -1.57 | 1.000 | 6.67 × 10-18 |
∗No differentially expressed in RNA-seq experiment; concordance correlation coefficient (CCC) value = 0.98.