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. 2018 Dec 4;9:608. doi: 10.3389/fgene.2018.00608

Table 2.

Technical validation of RNA-seq experiment by qPCR: list of validated genes, log2 of fold change values (log2FC) between high (H) and low (L) groups and Pearson correlations between expression values obtained from each technique.

Gene log2FC RNA-seq log2FC qPCR Pearson correlation p-Value
ADIPOQ 1.31 1.33 0.571 0.053
ATF3 -1.17 -1.22 0.984 6.92 × 10-9
CNOT10 -0.25 -0.14 0.642 0.024
DCAF5 -0.26 0.04 0.821 0.001
DNAJA1 -0.57 -0.53 0.961 1.01 × 10-8
EGR1 -1.64 -1.71 0.962 5.63 × 10-7
ELOVL6 1.50 0.83 0.807 0.002
FASN 2.54 1.19 0.808 0.001
FOS -1.67 -1.65 0.961 6.72 × 10-7
GPHN -0.05 -0.10 0.550 0.064
ITGB6 0.12 -0.18 0.758 0.004
PFKFB3 -1.10 -0.67 0.981 1.83 × 10-8
PLIN1 1.39 1.51 0.959 8.89 × 10-7
SCD 1.55 1.58 0.857 3.67 × 10-7
SPP1 -1.62 -1.57 1.000 6.67 × 10-18

No differentially expressed in RNA-seq experiment; concordance correlation coefficient (CCC) value = 0.98.