TABLE 3.
Samples included in the present study and de novo assembly statistics
| Sample ID | No. of viral copiesa |
Total RNA (ng)b |
Predicted HIV RNA (%)c |
No. of reads aligning to viral reference |
Genome covered by all contigs (%) |
No. of genes intact |
Merged contig length (bp) |
|---|---|---|---|---|---|---|---|
| TD003 | 41,002 | 8.70 | 0.0023 | 0 | 0 | 0 | 0 |
| TD006 | <50 | 7.65 | 0.0000033 | 0 | 0 | 0 | 0 |
| TD013 | 816 | 34.00 | 0.000012 | 0 | 0 | 0 | 0 |
| TD024 | 5,280 | 2.30 | 0.0011 | 4,998 | 93 | 9 | 9,531 |
| TD031 | 53,591 | 3.10 | 0.0087 | 9,065 | 90 | 9 | 9,397 |
| TD062 | 69,759 | 2.85 | 0.012 | 13,304 | 87 | 9 | 9,776 |
| CBL20 | >10,000,000 | 9.65 | >20 | 930,072 | 87 | 9 | 9,885 |
a
Absolute viral input estimated from viral load.
b
Total RNA input used for library preparation.
c
Estimated using a viral genome length of 10 kb and absolute viral input.