Table 1.
Protein | Organism | ExxER motif | TMH4–TMH10 Salt bridge | TMH1–TMH7 Salt bridge | Conformation | Ligand | PDB ID | Reference |
---|---|---|---|---|---|---|---|---|
AtNPF6.3 | Arabidopsis thaliana | EAVER | Yes | No | Inward-open Inward-open Inward-open | None Nitrate Nitrate | 5A2N 5A2O 4OH3 |
Parker and Newstead, 2014 Sun et al., 2014 |
PepTSo | Shewanella oneidensis | EACER | Yes | Yes | Occluded state Inward-open | None None |
2XUT 4UVM | Newstead et al., 2011 Fowler et al., 2015 |
PepTSo2 | Shewanella oneidensis | ELWER | Yes | No | Inward-open Inward-open Inward-open Inward-open | Alafosfalin Ala-Ala-Ala Ala-Tyr-(Br) Ala-Tyr-(Br)-Ala | 4LEP 4TPJ 4TPH 4TPG |
Guettou et al., 2013 Guettou et al., 2014 |
PepTSt | Streptococcus thermophilus | EMWER | Yes | Yes | Inward-open Inward-open Inward-open | None None None |
4APS 4D2B 5MMT |
Solcan et al., 2012 Lyons et al., 2014 Quistgaard et al., 2017 |
GkPOT | Geobacillus kaustophilus | EFWER | Yes | No | Inward-open Inward-open | None Alafosfalin | 4IKV 4IKZ |
Doki et al., 2013 |
YbgH | Escherichia coli | QIWEY | Yes | No | Inward-open | None | 4Q65 | Zhao et al., 2014 |
YePEPT | Yersinia enterocolitica | EMWER | Yes | Yes | Inward-open | None | 4W6V | Boggavarapu et al., 2015 |
PepTXc | Xanthomonas campestris | EACER | Yes | Yes | Auto-inhibited | None | 6EI3 | Parker et al., 2017 |
The sole crystal structure of an NPF transporter, NPF6.3 from A. thaliana was obtained by two different groups and solved as an apo-protein or in the presence of nitrate. The crystal structures of seven POT proteins from six different bacteria were solved as apo-proteins, in complex with the peptide mimic alafosfalin or with di- or tri-peptides. Protein Data Bank Identification Codes (PDB ID) for each solved structure are included.