Skip to main content
. 2018 Dec 4;9:1668. doi: 10.3389/fpls.2018.01668

Table 1.

List of available crystal structures for NPF/POT transporters.

Protein Organism ExxER motif TMH4–TMH10 Salt bridge TMH1–TMH7 Salt bridge Conformation Ligand PDB ID Reference
AtNPF6.3 Arabidopsis thaliana EAVER Yes No Inward-open Inward-open Inward-open None Nitrate Nitrate 5A2N 5A2O 4OH3 Parker and Newstead, 2014

Sun et al., 2014
PepTSo Shewanella oneidensis EACER Yes Yes Occluded state Inward-open None
None
2XUT 4UVM Newstead et al., 2011 Fowler et al., 2015
PepTSo2 Shewanella oneidensis ELWER Yes No Inward-open Inward-open Inward-open Inward-open Alafosfalin Ala-Ala-Ala Ala-Tyr-(Br) Ala-Tyr-(Br)-Ala 4LEP
4TPJ
4TPH
4TPG
Guettou et al., 2013 Guettou et al., 2014
PepTSt Streptococcus thermophilus EMWER Yes Yes Inward-open Inward-open Inward-open None
None
None
4APS 4D2B 5MMT Solcan et al., 2012
Lyons et al., 2014 Quistgaard et al., 2017
GkPOT Geobacillus kaustophilus EFWER Yes No Inward-open Inward-open None Alafosfalin 4IKV
4IKZ
Doki et al., 2013
YbgH Escherichia coli QIWEY Yes No Inward-open None 4Q65 Zhao et al., 2014
YePEPT Yersinia enterocolitica EMWER Yes Yes Inward-open None 4W6V Boggavarapu et al., 2015
PepTXc Xanthomonas campestris EACER Yes Yes Auto-inhibited None 6EI3 Parker et al., 2017

The sole crystal structure of an NPF transporter, NPF6.3 from A. thaliana was obtained by two different groups and solved as an apo-protein or in the presence of nitrate. The crystal structures of seven POT proteins from six different bacteria were solved as apo-proteins, in complex with the peptide mimic alafosfalin or with di- or tri-peptides. Protein Data Bank Identification Codes (PDB ID) for each solved structure are included.