Table 1.

Annotated genes, differentially expressed between samples in this study.

Comparison	Up-regulated genes	Down-regulated genes	Total DEG	%DEG	Total expressed genes
Wheat–rye hybrid Ph1+ vs. triticale Ph1+	150	194	344	0.47	72,430
Wheat–rye hybrid Ph1+ vs. wheat–rye hybrid Ph1-	478	95	573	0.79
Triticale Ph1+ vs. triticale Ph1-	1,779	893	2,672	3.69
Wheat Ph1+ vs. wheat Ph1-	450	24	474	0.72	65,583
All Ph1+ vs. All Ph1-	353	5	358	0.56	63,529

Ph1+, containing the Ph1 locus, Ph1-, lacking the Ph1 locus. Values in bold indicate the percentage of DEGs.