Table 2. Eurasian perch genome assembly statistics.
| 10X Genome assembly* | Genome assembly by Malmstrøm et al. (2017)* | |
|---|---|---|
| Contig statistics | ||
| Number of contigs | 100,796 | 181,537 |
| Total contig size (bp) | 851,640,084 | 626,588,998 |
| Contig N50 size (bp) | 18,196 | 4,140 |
| Largest contig (bp) | 241,857 | 46,493 |
| Scaffold statistics | ||
| Number of scaffolds | 31,105 | 139,898 |
| Total scaffold size (bp) | 958,225,764 | 630,583,430 |
| Scaffold N50 size (bp) | 6,260,519 | 5,973 |
| Largest scaffold (bp) | 29,260,448 | 73,288 |
| GC/N (%) | 40.9/11.1 | 40.6/0.6 |
| BUSCO genome completeness | ||
| Complete | 4,033 (88.0%) | 2,144 (46.8%) |
| Complete and single copy | 3,933 (85.8%) | 2,105 (45.9%) |
| Complete and duplicated | 100 (2.2%) | 39 (0.9%) |
| Fragmented | 323 (7.0%) | 1246 (27.2%) |
| Missing | 228 (5.0%) | 1194 (26.0%) |
| Annotation | ||
| Number of protein-coding genes | 23,397 | |
| Number of functionally-annotated proteins | 23,171 | |
| Mean protein length (interquartile range, aa) | 506 (224-614) | |
| Longest protein (aa) | 8,907 (nesprin-1) | |
| Average number (length, interquartile range of length) of exon per gene | 9 (228, 89-189 bp) | |
| Average number (length, interquartile range of length) of intron per gene | 8 (1,224, 150-1,340 bp) |
*
Minimum scaffold length is 1 Kb.