Table 1. Table comparing statistics for the sex-averaged, female and male C. sp. “Albock” linkage maps. The results of synteny analysis are included, showing the homologous Atlantic Salmon chromosome (Ssa) for each whitefish linkage group (Calb) and the re-ordered whitefish linkage group name (W).

Whitefish Linkage Group	Number of SNPs	LG length (cM)	SNPs/cM	Female LG length (cM)	Female SNPs/cM	Male LG length (cM)	Male SNPs/ cM	Homologous Salmon Chromosome	Reordered Whitefish LG	Female:Male recombination ratio
Calb01	253	75.96	0.30	91.07	0.36	63.67	0.25	Ssa01	W02	1.43
Calb02	228	83.57	0.37	101.33	0.44	69.58	0.31	Ssa01	W03	1.46
Calb03	220	78.51	0.36	84.40	0.38	87.95	0.40	Ssa21	W32	0.96
Calb04	214	58.45	0.27	66.69	0.31	50.05	0.23	Ssa10	W15	1.33
Calb05	190	66.93	0.35	63.63	0.33	71.66	0.38	Ssa12	W18	0.89
Calb06	187	53.16	0.28	70.69	0.38	37.88	0.20	Ssa13	W20	1.87
Calb07	181	71.53	0.40	68.13	0.38	88.06	0.49	Ssa04	W06	0.77
Calb08	173	52.28	0.30	56.37	0.33	45.30	0.26	Ssa10	W14	1.24
Calb09	170	79.41	0.47	73.03	0.43	91.75	0.54	Ssa07	W10	0.80
Calb10	165	62.43	0.38	60.45	0.37	65.05	0.39	Ssa01	W01	0.93
Calb11	164	65.01	0.40	64.04	0.39	66.05	0.40	Ssa11	W16	0.97
Calb12	164	51.09	0.31	70.15	0.43	30.22	0.18	Ssa22	W33	2.32
Calb13	162	69.34	0.43	71.26	0.44	63.49	0.39	Ssa29	W40	1.12
Calb14	157	65.11	0.41	61.78	0.39	72.14	0.46	Ssa13	W19	0.86
Calb15	156	64.90	0.42	63.19	0.41	71.73	0.46	Ssa16	W24	0.88
Calb16	154	56.17	0.36	55.30	0.36	65.75	0.43	Ssa20	W31	0.84
Calb17	151	65.53	0.43	69.40	0.46	61.63	0.41	Ssa23	W34	1.13
Calb18	149	61.50	0.41	65.22	0.44	62.38	0.42	Ssa09	W11	1.05
Calb19	147	62.15	0.42	68.25	0.46	55.50	0.38	Ssa14	W21	1.23
Calb20	144	66.36	0.46	79.08	0.55	56.52	0.39	Ssa27	W37	1.40
Calb21	143	71.78	0.50	69.37	0.49	83.01	0.58	Ssa25	W36	0.84
Calb22	137	71.12	0.52	74.56	0.54	67.96	0.50	Ssa03	W04	1.10
Calb23	127	64.80	0.51	68.96	0.54	69.78	0.55	Ssa06	W09	0.99
Calb24	127	52.57	0.41	58.54	0.46	54.23	0.43	Ssa15	W22	1.08
Calb25	124	57.74	0.47	61.62	0.50	60.81	0.49	Ssa24	W35	1.01
Calb26	123	64.59	0.53	70.67	0.57	62.12	0.51	Ssa19	W29	1.14
Calb27	118	46.03	0.39	61.06	0.52	30.24	0.26	Ssa18	W27	2.02
Calb28	115	59.05	0.51	63.68	0.55	59.73	0.52	Ssa15	W23	1.07
Calb29	114	62.40	0.55	61.31	0.54	70.58	0.62	Ssa09	W12	0.87
Calb30	112	62.75	0.56	68.12	0.61	63.96	0.57	Ssa05	W08	1.07
Calb31	111	53.35	0.48	63.62	0.57	42.48	0.38	Ssa20	W30	1.50
Calb32	104	56.67	0.54	63.47	0.61	53.94	0.52	Ssa18	W28	1.18
Calb33	97	67.73	0.70	70.46	0.73	66.40	0.68	Ssa09	W13	1.06
Calb34	79	61.12	0.77	71.34	0.90	62.97	0.80	Ssa03	W05	1.13
Calb35	56	36.88	0.66	55.57	0.99	21.14	0.38	Ssa28	W38	2.63
Calb36	45	24.18	0.54	15.92	0.35	30.75	0.68	Ssa17	W26	0.52
Calb37	37	27.48	0.74	34.82	0.94	21.51	0.58	Ssa11	W17	1.62
Calb38	34	11.86	0.35	0.00	0.00	24.01	0.71	Ssa16	W25	0.00
Calb39	32	17.17	0.54	0.00	0.00	33.66	1.05	Ssa04	W07	0.00
Calb40	31	15.20	0.49	23.55	0.76	7.41	0.24	Ssa28	W39	3.18
Total	5395	2293.86		2460.10		2263.05
Average	134.88	57.35	0.46	61.50	0.48	56.58	0.46			1.09