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. 2018 Dec 11;5:180285. doi: 10.1038/sdata.2018.285

Table 5. Taxonomic composition (top 15) revealed by 16S rRNA sequencing and shotgun metagenomic sequencing.

Genus 16S rRNA sequencing (RDP database)
Shotgun metagenome sequencing (Nr database)
16SSP50 (%) 16SSQB (%) MS1P50(%) MS1QB (%)
Enterococcus 1,675 (5.0%) 14,576 (43.8%) 765,432 (18.7%) 7,412,022 (63.3%)
Acinetobacter 7,117 (21.3%) 4,895 (14.7%) 663,036 (16.2%) 340,064 (2.9%)
Enterobacter 5,295 (15.8%) 6,021 (18.1%) 198,836 (4.9%) 1,265,284 (10.8%)
Aeromonas 5,954 (17.8%) 0 (0%) 354,508 (8.7%) 150 (0.0013%)
Stenotrophomonas 1,491 (4.4%) 3,773 (11.3%) 69,468 (1.7%) 785,760 (6.7%)
Bacillus 2,910 (8.7%) 728 (2.2%) 225,798 (5.5%) 54,856 (0.47%)
Staphylococcus 2,473 (7.4%) 224 (0.67%) 56,150 (1.4%) 58,798 (0.50%)
Planococcaceae_unclassified 2,064 (6.2%) 111 (0.33%)
Arthrobacter 734 (2.2%) 793 (2.4%) 57,282 (1.4%) 11,268 (0.096%)
Comamonas 1,004 (3.0%) 0 (0%) 27,974 (0.68%) 8,644 (0.074%)
Delftia 242 (0.70%) 534 (1.6%) 100,894 (2.5%) 139,532 (1.2%)
Methylobacterium 751 (2.2%) 9 (0.027%) 12,394 (0.30%) 254 (0.0022%)
Enterobacteriaceae_unclassified 20 (0.05%) 606 (1.8%)
Pseudomonas 138 (0.41%) 269 (0.81%) 25,140 (0.62%) 122,492 (1.0%)
Aureimonas 389 (1.2%) 3 (0.0090%) 2,590 (0.063%) 6 (0.00%)
Total reads 33,473 33,254 4,086,456 11,713,188