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(A) RiboSketch gives the user complete control over the positions of nucleotides, shown in this 6-stranded RNA cube (Halman et al., 2017). Nucleotide placement and choices of foreground/background layout creating a 3D perspective were performed interactively. (B) SHAPE data coloring of 5S rRNA, E.coli (Kladwang et al., 2014). (C) Depiction of Hammerhead Ribozyme including non-canonical interactions (Mir et al., 2016) (Color version of this figure is available at Bioinformatics online.)
