Table 1. Distribution of major M. tuberculosis complex families (Lineages 1–6) and M. bovis from a total of 1,131 strains from newly infected TB patients in Bamako, Mali.
| Lineage (L) | Family | n (%) of total isolates |
|---|---|---|
| Indo-oceanic (L1) | EAI | 42(3.7%) |
| East Asian (L2) | Beijing | 16(1.4%) |
| Central Asia (L3) | CAS | 18(1.6%) |
| Euro-American (L4) | LAM | 242(21.4%) |
| Haarlem | 81(7.2%) | |
| T-Clade | 276(24.4%) | |
| H37Rv-like | 3(0.3%) | |
| S-Clade | 17(1.5%) | |
| X-Clade | 26(2.3%) | |
| West African 1 (L5) | MAF-1 | 16(1.4%) |
| West African 2 (L6) | MAF-2 | 259(22.9%) |
| Animal lineage (M. bovis) | 9 (0.8%) | |
| Unclassifiable (families 33, 34, 35, 36) | 126 (11.1%) | |
Global distribution of the major six lineages identified in Bamako between February 2015, and December 2017.