Table 1.

Characteristics of subfamily II GH3s in G. hirsutum (NAU-NBI, v1.1)

Gene name	Locus_ID	Arabidopsis orthologs	ORF	Introns	Chr.	Position				Deduced polypeptide
						Start	End	Strand		Length (aa)	MW (Da)	pI
Gh_AGH3.1	Gh_A03G1628	AtGH3.1	1797	2	A03	97,446,817	97,448,799	–		598	67,902.66	6.59
Gh_DGH3.1	Gh_D02G2045	AtGH3.1	1797	2	D02	64,687,129	64,689,111	–		598	67,882.61	6.59
Gh_AGH3.2	Gh_A12G0181	AtGH3.1	1794	2	A12	2,676,124	2,678,101	–		597	67,886.41	6.02
Gh_DGH3.2	Gh_D12G0182	AtGH3.1	1797	2	D12	2,358,751	2,360,733	–		598	67,901.46	6.02
Gh_AGH3.3	Gh_A13G0392	AtGH3.1	1809	2	A13	5,213,724	5,216,267	+		602	68,094.70	5.55
Gh_DGH3.3	Gh_D13G0434	AtGH3.1	1809	2	D13	4,919,812	4,922,365	+		602	68,036.63	5.59
Gh_AGH3.4	Gh_A11G0443	AtGH3.1	1779	2	A11	4,184,163	4,186,123	+		592	67,383.32	5.58
Gh_DGH3.4	Gh_D11G0514	AtGH3.1	1779	2	D11	4,476,391	4,478,353	+		592	67,370.40	5.83
Gh_AGH3.5	Gh_A11G1993	AtGH3.1	1821	2	A11	56,447,917	56,449,936	–		606	68,573.57	5.60
Gh_DGH3.5	Gh_D11G1989	AtGH3.1	1821	2	D11	26,018,863	26,020,882	+		606	68,492.53	5.53
Gh_AGH3.6	Gh_A01G0546	AtGH3.5/3.6	1842	2	A01	9,238,374	9,240,450	+		613	69,496.44	5.91
Gh_DGH3.6	Gh_D01G0557	AtGH3.5/3.6	1842	2	D01	7,266,590	7,268,663	+		613	69,476.51	5.87
Gh_AGH3.7	Gh_A01G0547	AtGH3.5/3.6	1842	2	A01	9,407,662	9,409,824	+		613	69,261.22	6.08
Gh_DGH3.7	Gh_D01G0559	AtGH3.5/3.6	1842	2	D01	7,427,672	7,429,831	+		613	69,183.12	6.08
Gh_AGH3.8	Gh_A03G1429	AtGH3.5/3.6	1848	2	A03	94,060,935	94,062,983	+		615	69,133.16	5.51
Gh_AGH3.9	Gh_A11G1054	AtGH3.9	1788	3	A11	12,002,212	12,005,380	+		595	67,035.10	5.58
Gh_DGH3.9	Gh_D11G1209	AtGH3.9	1788	3	D11	11,289,480	11,292,643	+		595	66,823.59	5.41
Gh_AGH3.17	Gh_A03G1354	AtGH3.17	1935	4	A03	92,377,252	92,379,703	–		644	73,210.99	6.18
Gh_DGH3.17	Gh_D02G1794	AtGH3.17	1935	4	D02	60,662,189	60,664,648	–		644	73,258.06	6.81
Gh_AGH3.18	Gh_A04G0874	AtGH3.17	1629	4	A04	56,316,128	56,318,166	–		542	61,206.77	5.97

Characteristics of GH3s in latest genomes of G. hirsutum (DOE-JGI, v3.1) is shown in Additional file 4 Table S3