Table 3.
Total number of genes expressed in each data set in more than 25% of animals and the number of genes significantly associated with residual feed intake (RFI) phenotypes (GSAphenotype) and GEBV (GSAGEBV; P < 0.05) that were downregulated (–) or up-regulated (+) in animals with higher RFI
| No. of genes expressed | GSAphenotype | GSAGEBV | ||||||
|---|---|---|---|---|---|---|---|---|
| Breed | Tissue | All (FDR1) | – | + | All (FDR1) | – | + | |
| Angus | Muscle | 12,278 | 922 (0.65) | 468 | 454 | 791 (0.76) | 381 | 410 |
| Angus | Liver | 12,233 | 768 (0.79) | 295 | 473 | 1028 (0.57) | 438 | 590 |
| Holstein | Liver | 14,374 | 473 (1.55) | 233 | 240 | 526 (1.39) | 285 | 241 |
| Holstein | Blood | 14,176 | 4817 (0.10) | 2561 | 2256 | 137 (5.39) | 43 | 94 |
1
False discovery rate.