Table 3.
Genes harbored in genomic windows that explained more than 1% of the additive genetic variance for early pregnancy in Nelore heifers
| CHR1 | Position (UMD 3.1 bovine assembly2) | Genes | Var,3 % | No. of SNP4 |
|---|---|---|---|---|
| 5 | 72,521,518–74,466,890 | APOL6, HMGXB4, HMOX1, ISX, LARGE1, MB, MCM5, RASD2, RBFOX2, SNORA76, and TOM1 | 3.90 | 22 |
| 76,522,303–78,484,850 | BICD1, DNM1L, FGD4, KIAA1551, PKP2, SYT10, and YARS2 | 3.31 | 27 | |
| 80,633,605–82,455,158 | CCDC91, COX7ALP1, ERGIC2, FAR2, KLHL42, and PTHLH | 1.70 | 22 | |
| 14 | 22,507,464–24,484,847 | ATP6V1H, FAM150A, LYPLA1, MRPL15, NPBWR1, OPRK1, PCMTD1, RB1CC1, RGS20, RP1, SOX17, ST18, TCEA1, U2, U6, and XKR4 | 1.62 | 29 |
| 18 | 54,518,279–56,456,772 | ALDH16A1, BAX, BCAT2, BOSTAUV1R403, BOSTAUV1R404, C19orf68, C5AR1, C5AR2, CA11, CABP5, CCDC114, CCDC155, CCDC9, CD37, CRX, DBP, DHDH, DHX34, DKKL1, ELSPBP1, EMP3, FAM38E, FCGRT, FGF21, FLT3LG, FTL, FUT1, FUT2, GLTSCR1, GLTSCR2, GRIN2D, GRWD1, GYS1, HRC, HSD17B14, IZUMO1, KCNA7, KCNJ14, KDELR1, KPTN, LHB, LIG1, LIN7B, LMTK3, MAMSTR, MEIS3, NAPA, NOSIP, NPAS1, NTF4, NTN5, NUCB1, PIH1D1, PLEKHA4, PPFIA3, PPP1R15A, PRRG2, PTH2, RASIP1, RCN3, RPL18, RPS11, RUVBL2, SAE1, SEC1, SEPW1, SLC17A7, SLC6A16, SLC8A2, SNRNP70, SPACA4, SPHK2, SULT2A1, SULT2B1, SYNGR4, TEAD2, TMEM143, TMEM160, TRPM4, TULP2, ZC3H4, ZNF114, and ZNF541 | 1.18 | 27 |
| 14 | 28,561,608–30,475,350 | GGH, NKAIN3, TTPA, and YTHDF3 | 1.02 | 23 |
1
CHR = Bovine autosome.
3
Var = genetic variance explained by the window.
4
No. of SNP is the number of SNP in the window.