Table 4.
Genes harbored in genomic windows that explained more than 1% of the additive genetic variance for number of antral follicles in Nelore heifers
| CHR1 | Position (UMD 3.1bovine assembly2) | Genes | Var,3 % | No. of SNP4 |
|---|---|---|---|---|
| 22 | 14,507,849–16,474,506 | ACKR2, ANO10, CCDC13, CCK, HHATL, HIGD1A, KLHL40, LYZL4, NKTR, SEC22C, SNRK, SS18L2, TCAIM, TOPAZ1, TRAK1, VIPR1, ZBTB47, ZNF197, ZNF445, and ULK4 | 5.56 | 25 |
| 11 | 69,520,906–71,472,289 | ALK, BRE, C11H2orf71, CLIP4, FAM179A, FOSL2, LBH, PLB1, PPP1CB, SNORD53_SNORD92, SPDYA, TRMT61B, WDR43, and YPEL5 | 5.50 | 27 |
| 8 | 6519,096–8474,290 | ADAM29, BLK, C8orf74, CTSB, DEFB134, FAM167A, FDFT1, GATA4, GLRA3, HPGD, MTMR9, NEIL2, PINX1, SOX7, TDH, and XKR6 | 3.58 | 22 |
| 16 | 70,502,173–72,455,202 | ARL8A, ELF3, GPR37L1, LGR6, PPP1R12B, PROX, PTPN14, PTPN7, RNPEP, RPS6KC1, SMYD2, SYT2, and UBE2T | 1.96 | 25 |
| 14 | 22,507,464–24,484,847 | ATP6V1H, FAM150A, LYPLA1, MRPL15, NPBWR1, OPRK1, PCMTD1, RB1CC1, RGS20, RP1, SOX17, ST18, TCEA1, and XKR4 | 1.29 | 29 |
| 2 | 122,533,476–124,485,696 | COL16A1, FABP3, HCRTR1, LAPTM5, MATN1, NKAIN1, PEF1, PUM1, SDC3, SERINC2, SNRNP40, and TINAGL1 | 1.12 | 22 |
| 15 | 8507,403–10,464,870 | ARHGAP42 and CNTN5 | 1.11 | 24 |
1
CHR = Bovine autosome.
3
Var = genetic variance explained by the window.
4
No. of SNP is the number of SNP in the window.