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Haplotype-based GWAS maps navel length at yearling associations to a locus containing HMGA2. (A) Each point in the Manhattan plot corresponds to a six-marker long haplotype. The dashed horizontal line corresponds to the Bonferroni threshold (p < 2.44 × 10-8). (B) Distributions of deregressed EBVs according to number of copies of the leading haplotype. The HMGA2 locus accounted for 2.04% of the variance in deregressed EBVs.
