FIGURE 3.

Accuracy of genotype calls in the (A) in silico skim global diversity panel compared to the original 10x sequencing data and (B) DH skim data sets compared to the original 2x DH sequencing data. The percentage of genotypes across the whole genotype matrix (each SNP in each individual) within each skim SNP set is represented. Green bars represent genotype calls which are consistent with the corresponding full sequencing data, orange bars represent genotype calls which do not match, and the gray/black bars indicate missing genotypes in the (A) in silico skim global diversity panel and (B) genotypes present in the DH skim data but which could not be evaluated for accuracy due to insufficient read depth in the original 2x data.