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. 2018 Dec 13;85(1):e02414-18. doi: 10.1128/AEM.02414-18

TABLE 1.

Fusarium fujikuroi strains used in the present study and their characteristicsa

Fumonisin productiona Strain Isolation sourceb Geographic originc Translation elongation factor 1α sequence (GenBank accession no.) RNA polymerase
II second-largest
subunit
 SNP data (TEF_T618G,
FUM78_C41T,
FUM8_G2834A, CPR_C1152A, P4504_C842T)e 		AFLP haplotype Thiophanate-methyl
resistance		 Gibberellin
spot on TLCf
 Reference or
sourceg
Sequence (GenBank
accession no.)		 SNP RPB2_C3250Td GA4/7 GA3
Nonproducer
MAFF235949h 91 rice N JN695731 LC133055 D (T) G, T, A, A, T 1 S − ±
Gfc0801001h 08 bakanae-diseased rice P-I JN695733 LC133056 D (T) (G, T, A, A, T) 2 R + +
Gfc0801002 08 bakanae-diseased rice P-I D G, T, A, A, T 3 R + +
Gfc0801003 08 bakanae-diseased rice P-I D G, T, A, A, T 4 R + +
MYG92-10 92 bakanae-diseased rice J D G, T, A, A, T 5 R + + Tateishi and
Chida (48)
SMN86-2h 86 bakanae-diseased rice u D G, T, A, A, T 6 R + + Tateishi and
Chida (48)
MIE92-4 92 bakanae-diseased rice A D G, T, A, A, T 7 R + + Tateishi and
Chida (48)
Gfc9424702h 94 bakanae-diseased rice A JN695735 LC133057 D (T) G, T, A, A, T 8 R + + H. Suzuki
Gfc9424703 94 bakanae-diseased rice A D G, T, A, A, T 9 R + + H. Suzuki
Gfc9424707 94 bakanae-diseased rice A D G, T, A, A, T 10 R + + H. Suzuki
Gfc0625001h 06 bakanae-diseased rice B-I D G, T, A, A, T 11 R + + T. Kitazawa
Gfc0625002 06 bakanae-diseased rice B-II D G, T, A, A, T 12 R + + T. Kitazawa
Gfc0625004 06 bakanae-diseased rice B-III D G, T, A, A, T 12 R + + T. Kitazawa
Gfc0625005h 06 bakanae-diseased rice B-IV D G, T, A, A, T 12 R + ± T. Kitazawa
Gfc0625006 06 bakanae-diseased rice B-V D G, T, A, A, T 12 R + + T. Kitazawa
Gfc0625007 06 bakanae-diseased rice B-VI D G, T, A, A, T 12 R + + T. Kitazawa
Gfc0625008 06 bakanae-diseased rice B-IV D G, T, A, A, T 13 R + + T. Kitazawa
Gfc0625010 06 bakanae-diseased rice B-IV D G, T, A, A, T 14 R + + T. Kitazawa
Gfc0925005h 09 bakanae-diseased rice B-IV D G, T, A, A, T 15 R + ±
Gfc0925010 09 bakanae-diseased rice B-VII D G, T, A, A, T 16 R + +
Gfc0925011 09 bakanae-diseased rice B-VIII D G, T, A, A, T 17 R + +
Gfc0925012 09 bakanae-diseased rice B-IX D G, T, A, A, T 18 R + +
APF06083h Unknown Unknown JN695736 LC133058 D (T) G, T, A, A, T 19 R + ± S. Fuji
Gfc8707123 Unknown Unknown D G, T, A, A, T 20 R + + H. Hamamura
Gfc8707182 Unknown Unknown D G, T, A, A, T 20 R + + H. Hamamura
Gfc8707117 Unknown Unknown D G, T, A, A, T 21 R + + H. Hamamura
Gfc8707249 Unknown Unknown D G, T, A, A, T 22 S + + H. Hamamura
Gfc8707642 Unknown Unknown D G, T, A, A, T 23 R + + H. Hamamura
Gfc0825001h 05 rice seed B-VII JN695734 LC133059 D (T) G, T, A, A, T 24 R + +
Gfc0825002 05 rice seed B-VII D G, T, A, A, T 24 R + +
Gfc0825003 05 rice seed B-VII D G, T, A, A, T 24 R + +
Gfc0825004 05 rice seed B-VII D G, T, A, A, T 24 R + +
Gfc0825005 05 rice seed B-VII D G, T, A, A, T 24 R + +
Gfc0825006 05 rice seed B-VII D G, T, A, A, T 24 R + +
Gfc0901002 07 rice seed P-II D G, T, A, A, T 25 R + +
Gfc0901005 07 rice seed P-II D G, T, A, A, T 25 R + +
Gfc0901009h 07 rice seed P-II D G, T, A, A, T 26 R + +
Gfc1004001 09 rice seed J D G, T, A, A, T 27 R + +
Gfc1004002 09 rice seed J D G, T, A, A, T 28 R + +
Gfc1034001h 09 rice seed y D G, T, A, A, T 29 R + +
GL24h Rice California, USA LC133052 LC133060 D (T) G, T, A, A, T 19 S + + Proctor et al.
(49)
GL25 Rice Unknown D G, T, A, A, T 30 S + + Proctor et al.
(49)
GL27 Rice Unknown D G, T, A, A, T 31 S + + Proctor et al.
(49)
GL28 Rice California, US D G, T, A, A, T 32 R + + Proctor et al.
(49)
Producer
MAFF235463h 90 wheat N JN695737 LC133061 (C) T, C, G, C, C 33 S − −
Gfc1004003h 09 rice seed J LC133053 LC133062 (C) T, C, G, C, T 34 S − −
Gfc1006001 09 rice seed m C T, C, G, C, C 35 S − −
Gfc1006002 09 rice seed m C T, C, G, C, C 36 S − −
Gfc1006007 09 rice seed m C T, C, G, C, C 37 S − −
Gfc1019001 10 rice seed g-I C T, C, G, C, C 38 S − −
Gfc1019003h 10 rice seed g-I C T, C, G, C, C 39 S − −
Gfc1019004 10 rice seed g-I C T, C, G, C, C 40 S − −
Gfc1016022 09 rice seed H C T, C, G, C, C 41 S − −
Gfc1016024 09 rice seed H C T, C, G, C, C 42 S − −
Gfc1016025 09 rice seed H C T, C, G, C, C 43 S − −
Gfc1016026 09 rice seed H C T, C, G, C, C 43 S − −
Gfc0821004h 08 rice seed K-I JN695740 LC133063 (C) T, C, G, C, T 44 S − −
Gfc0921001 09 rice seed K-II C T, C, G, C, C 45 S − −
Gfc0921002 09 rice seed K-II C T, C, G, C, C 46 S − −
Gfc0921009 09 rice seed K-II C T, C, G, C, C 47 S − −
Gfc0921014 09 rice seed K-II C T, C, G, C, C 48 S − −
Gfc0921034 09 rice seed K-III C T, C, G, C, C 49 S − −
Gfc0921039h 09 rice seed K-III C T, C, G, C, C 50 S + −
Gfc0921040 09 rice seed K-III C T, C, G, C, C 51 S − −
Gfc0921041 09 rice seed K-III C T, C, G, C, C 52 S − −
Gfc1025029 09 rice seed B-VII C T, C, G, C, C 53 S − −
Gfc1025037 09 rice seed B-VII C T, C, G, C, C 53 S − −
Gfc1025091 09 rice seed B-VII C T, C, G, C, T 54 S − −
Gfc1034002 09 rice seed y C T, C, G, C, C 55 S − −
Gfc1041003 10 rice seed p-I C T, C, G, C, C 56 S − −
Gfc1041010 10 rice seed p-I C T, C, G, C, C 57 S − −
Gfc1041011 10 rice seed p-I C T, C, G, C, C 56 S − −
Gfc1043032h 09 rice seed R-I C T, C, G, C, C 58 S − −
Gfc1043035 09 rice seed R-I C T, C, G, C, C 59 S − −
Gfc1043037 09 rice seed R-I C T, C, G, C, C 60 S − −
Gfc1043045 09 rice seed R-I C T, C, G, C, C 60 S − −
Gfc1043046 09 rice seed R-I C T, C, G, C, C 58 S − −
Gfc1043047 09 rice seed R-I C T, C, G, C, C 58 S − −
Mo78 06 forage paddy rice for livestock C-I C T, C, G, C, C 61 S − − T. Tsukiboshi
Mo80 06 forage paddy rice for livestock C-I C T, C, G, C, C 62 S − − T. Tsukiboshi
Mo141 07 silage of forage paddy rice for livestock f-I C T, C, G, C, T 63 S − − T. Tsukiboshi
Mo136 07 silage of forage paddy rice for livestock f-I C T, C, G, C, C 64 S − − T. Tsukiboshi
Mo309 Maize C C T, C, G, C, C 65 S − −
IBR89-1 Unknown N C T, C, G, C, C 66 S − − Tateishi and
Chida (48)
Gfc0825007h 07 maize B-IV JN695738 LC133064 (C) T, C, G, C, C 67 S − −
Gfc0825009h 07 maize B-IV JN695739 LC133065 (C) (T, C, G, C, C) 68 S − −
Gfc0825011h 07 maize B-IV C T, C, G, C, C 69 S + −
Gfc0009063h 00 strawberry C-II C T, C, G, C, C 70 S − − M. Morishima
Gfc0009105h 00 strawberry C-III JN695742 LC133066 (C) T, C, G, C, C 71 S − − M. Morishima
Gfc0009110 00 strawberry C-IV C T, C, G, C, C 72 S − − M. Morishima
Gfc0009117 00 strawberry C-V C T, C, G, C, C 73 S − − M. Morishima
41-79h Wheat USA LC133054 LC133067 (C) T, C, G, C, C 74 S − − Busman et al.
(21)
41-84 Wheat USA C T, C, G, C, C 75 S − − Busman et al.
(21)
41-116 Wheat USA C T, C, G, C, C 76 S − − Busman et al.
(21)
41-108 Wheat USA C T, C, G, C, C 77 S − − Busman et al.
(21)
F. fujikuroi (whole genome, secondary metabolite profiles, and pathogenicity to ricei
(Nonproducer)j IMI58289 Infected rice China (T) (G, C, G, C, T) Producer
Nonproducer m567 Infected rice Japan (T) (G, C, G, C, T) Producer
Nonproducer MRC2276 Infected rice Philippines (T) (G, C, A, C, T) Producer
Nonproducer C1995 Infected rice Taiwan (T) (G, C, G, A, T) Producer
Producer B14 Infected rice South Korea (C) (T, C, G, C, C) (Nonproducer)j
(Nonproducer)i B20 Infected rice South Korea (T) (G, C, G, A, T) Producer
Nonproducer E282 Infected rice Italy (T) (G, T, A, A, T) Producer
Nonproducer FSU48 Maize Germany (T) (G, T, A, A, T) Producer
Nonproducer NCIM 1100 Infected rice India (T) (G, T, A, A, T) Producer
a

All strains used in this study were previously investigated in Suga et al. (8).

b

First two digits indicate harvest year.

c

Letters indicate differences in geographic origin rather than actual geographic names. Prefecture-city or town (if the city or town is known) was indicated by insignia.

d

Single nucleotide polymorphisms were determined by dCAPs. Nucleotide determined by sequencing is indicated in parentheses, but the uncut type is indicated as D (i.e., not C).

e

Single nucleotide polymorphisms were determined by Luminex.

f

Ten microliters of culture filtrate was spotted on TLC. +, clear spot detected; ±, ambiguous spot; −, no spot detected.

g

All strains were used in the previous fumonisin analysis (Suga et al. [8]), and the references only of strains not originally isolated in the previous analysis were indicated.

h

Strains used to fumonisin and gibberellin quantification by UPLC-MS/MS and pathogenicity test.

i

Conditions for fumonisin and gibberellin detection were different from those of this study, and SNP data were obtained from the whole-genome sequences in the study by Niehaus et al. (24).

j

Results of triplicates were not stable, and a small amount was occasionally detected (Niehaus et al. [24]).