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. 2018 Nov 10;46(22):11671–11686. doi: 10.1093/nar/gky1062

Table 3.

Experimental trends in thermal stability of the aptamer constructs in presence and absence of the L-Arm ligand

System Motif T m (°C)a ΔTm (°C) Change (reference)c
apt n.a. 55.2 ± 1.6* ref*
apt(ImH+) Non 56.4 ± 1.3 1.2 ± 2.0 + T3ImH+ (*)
f2-apt n.a. 53.5 ± 0.7∧ f2-ref∧
−1.7 ± 2.0 + double flip (*)
+ L-Armb 62.2 ± 1.7 8.7 ± 1.9 + L-Arm (∧)
f2-apt (ImH+) in 64.9 ± 1.1 11.4 ± 1.3# + T3ImH+ (∧)
+ L-Arm[b] 69.4 ± 0.8 4.5 ± 1.4 + L-Arm (#)
15.9 ± 1.3 +(T3ImH+ & L-Arm) (*)

a1 μM strand concentration, 100 mM NaCl, 10 mM sodium phosphate, pH 7.0 The reported errors are one standard deviation as described in the materials section.

bThe L-Arm concentration used was 10 mM representing a 10 000:1 L-Arm/aptamer ratio.

c *, ∧ and # refer to the same labels introduced in column Tm in order to identify the temperature used as a reference to gauge the impact of the change mentioned.