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. 2018 Dec 17;19:941. doi: 10.1186/s12864-018-5228-2

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© The Author(s) 2018

Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 11 — Haplotype changes indicative of recombination break points. SNP Coverage tracks for seven accessions on chr1A_part1:7261243-7340668 . Allowing for poor coverage of some SNPs/indels, accessions have been sorted by haplotypes and haplotype blocks highlighted by boxes. Two putative recombination break points can be inferred by changes in the haplotypes group membership. Coloured drops hanging off the read coverage profile indicate the presence of putative SNPs/indels to the reference, A-green, T-red, C-blue, G-yellow, indel-grey