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. 2018 Dec 10;6:606. doi: 10.3389/fchem.2018.00606

Figure 2.

Figure 2

The two models used. The QM/MM model (A) includes the whole protein with the water molecules, the red box defines the QM region used in both cluster (B) and QM/MM calculations. The amino acid residues of the QM portion are shown with ball and sticks representation.