Table 1. Significantly deregulated lincRNA transcripts in GIST vs. GIST adjacent tissue (paired samples of 15 patients) obtained from small RNA sequencing data.
| Transcript | lincRNA | p-value | Benjamini-Hochberg adjusted p-valuea |
Fold Change, GIST vs. adjacent tissue | Log2(FC), GIST vs. GIST adjacent tissue |
|---|---|---|---|---|---|
| ENST00000447298.1 | H19 | 1.13×10−6 | 0.002 | 69.2 | 6.1 |
| ENST00000428066.5 | H19 | 1.13×10−6 | 0.002 | 68.9 | 6.1 |
| ENST00000442037.5 | H19 | 1.42×10−6 | 0.002 | 61.2 | 5.9 |
| ENST00000446406.5 | H19 | 2.99×10−6 | 0.002 | 34.2 | 5.1 |
| ENST00000414790.5 | H19 | 2.99×10−6 | 0.002 | 34.1 | 5.1 |
| ENST00000412788.5 | H19 | 2.99×10−6 | 0.002 | 34.0 | 5.1 |
| ENST00000431095.5 | H19 | 3.66×10−6 | 0.002 | 33.9 | 5.1 |
| ENST00000422826.1 | H19 | 2.99×10−6 | 0.002 | 33.9 | 5.1 |
| ENST00000411754.5 | H19 | 3.66×10−6 | 0.002 | 33.8 | 5.1 |
| ENST00000439725.5 | H19 | 3.66×10−6 | 0.002 | 33.7 | 5.1 |
| ENST00000417089.5 | H19 | 3.66×10−6 | 0.002 | 33.7 | 5.1 |
| ENST00000582452.1 | LINC00908 | 4.99×10−5 | 0.016 | 33.3 | 5.1 |
| ENST00000598996.2 | FENDRR | 2.20×10−5 | 0.011 | 15.8 | 4.0 |
| ENST00000519898.5 | CARMN | 1.18×10−4 | 0.028 | 11.1 | 3.5 |
| ENST00000610481.1 | MALAT1 | 2.34×10−4 | 0.046 | 8.2 | 3.0 |
| ENST00000544868.2 | MALAT1 | 3.28×10−5 | 0.012 | 6.6 | 2.7 |
| ENST00000508832.2 | MALAT1 | 1.47×10−4 | 0.034 | 6.0 | 2.6 |
| ENST00000534336.1 | MALAT1 | 8.87×10−5 | 0.022 | 5.3 | 2.4 |
| ENST00000619449.1 | MALAT1 | 8.55×10−5 | 0.022 | 5.0 | 2.3 |
| ENST00000637098.1 | LINC00862 | 8.29×10−5 | 0.022 | 4.6 | 2.2 |
| ENST00000582320.2 | AC024267.1–201 | 6.26×10−5 | 0.019 | 0.1 | -2.9 |
| ENST00000607097.1 | AC084346.2–201 | 4.58×10−6 | 0.002 | 0.1 | -3.2 |
| ENST00000413053.2 | MIR194-2HG | 3.67×10−5 | 0.013 | 0.01 | -6.6 |
a The difference is significant when Benjamini-Hochberg adjusted p-value is < 0.05.
FC–fold change