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. 2018 Dec 11;9:1828. doi: 10.3389/fpls.2018.01828

FIGURE 3.

FIGURE 3

Molecular Phylogenetic analysis by Maximum Likelihood method. The evolutionary history was inferred by using the Maximum Likelihood method based on the Tamura 3-parameter model (Tamura, 1992). The bootstrap consensus tree inferred from 1000 replicates is taken to represent the evolutionary history of the taxa analyzed (Felsenstein, 1985). Branches corresponding to partitions reproduced in less than 50% bootstrap replicates are collapsed. The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (1000 replicates) are shown next to the branches (Felsenstein, 1985). Initial tree(s) for the heuristic search were obtained by applying the Neighbor-Joining method and BioNJ algorithms to a matrix of pairwise distances estimated using the Maximum Composite Likelihood (MCL) approach, and then selecting the topology with superior log likelihood value. The analysis involved 37 nucleotide sequences. All positions containing gaps and missing data were eliminated. There were a total of 127 positions in the final dataset. Evolutionary analyses were conducted in MEGA6 (Tamura et al., 2013). Accession numbers are given next to the species name.